View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_30 (Length: 333)
Name: NF20090_low_30
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 7568689 - 7568364
Alignment:
| Q |
8 |
aagcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctcccaaaaatccaataactgatccaactataattttccaatca |
107 |
Q |
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| T |
7568689 |
aagcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctcccaaaaatccaataattgatccaactataattttccaatca |
7568590 |
T |
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| Q |
108 |
aatttcatttcctgctcaaccagccagtaaatataatgcatttcagatatatatactatataaaaagaaataccaattaaccaaaacacatatgaaaatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7568589 |
aatttcatttcctgctcaaccagccagtaaatataatgcatttcagatatatatactatataaaaagaaataccaattaaccaaaacacatatgaaaatt |
7568490 |
T |
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| Q |
208 |
aatgaataatgttatgaactcacaggccaaacaggttcataagaagactttccactttcccataagaaatcaaccattgcttttagaaatccttttgttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7568489 |
aatgaataatgttatgaactcacaggccaaacaggttcataagaagactttccactttcccataagaaatcaaccattgcttttagaaatccttttgttt |
7568390 |
T |
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| Q |
308 |
ctttctcaacaaactttgctggttct |
333 |
Q |
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| T |
7568389 |
ctttctcaacaaactttgctggttct |
7568364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 33126727 - 33126845
Alignment:
| Q |
9 |
agcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctcccaaaaatccaataactgatccaactataattttccaatcaa |
108 |
Q |
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| T |
33126727 |
agcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctccaaaaaatccgacaatagaccctacgacaattctccaaccaa |
33126826 |
T |
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| Q |
109 |
atttcatttcctgctcaac |
127 |
Q |
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| T |
33126827 |
acttcatttcctgctcaac |
33126845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 50747481 - 50747409
Alignment:
| Q |
9 |
agcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctcccaaaaatccaataa |
81 |
Q |
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|||||||| || || || |||||||| |||||||||||||||||||| || |||||||| |||||||||||| |
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| T |
50747481 |
agcataggaacgaatatgccaccaccacctacacctccaacacttccaaacgctgctccacaaaatccaataa |
50747409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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