View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_31 (Length: 324)
Name: NF20090_low_31
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 2763849 - 2764065
Alignment:
| Q |
11 |
atcatcatgtgatcatttcaataaaatttgattgtaatcatcttcactcttcataaaatttgttttctaatcttgtcaattgttctatcagatactagtt |
110 |
Q |
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| T |
2763849 |
atcatcatgtgatcatttcaataaaatttgattgtaatcatcttcactcttcataaaatttgttttctaatcttgtcaattgttctatcagatactagtt |
2763948 |
T |
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| Q |
111 |
tgagaattataatgagaacttcatcaattctttaagtttctctctcggtctgctcaagatcaacatcttgaataacttttaccaaaattgattattatat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2763949 |
tgagaattataatgagaacttcatcaattctttaagtttctctctcggtctgctcaagatcaacatcttgaataacttttaccaaaattgattattatat |
2764048 |
T |
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| Q |
211 |
aattatatatgcaaatc |
227 |
Q |
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||||||||||||||||| |
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| T |
2764049 |
aattatatatgcaaatc |
2764065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 2764124 - 2764211
Alignment:
| Q |
223 |
aaatccacatacaaattagaagtcctcctctggttaagcttgctagaacacaatactacaaatcaccattattatttattttagtgtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2764124 |
aaatccacatacaaattagaagtcctcctctggttaagcttgctagaacataatactacaaatcaccattattatttattttagtgtt |
2764211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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