View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_34 (Length: 319)
Name: NF20090_low_34
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 3767461 - 3767159
Alignment:
| Q |
1 |
ctttactgtctccacagttagcatcacaacaatctcttgcatccaccataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3767461 |
ctttactgtctccacagttagcatcacaacaatctcttgcatccaccataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatc |
3767362 |
T |
|
| Q |
101 |
ttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3767361 |
ttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaa |
3767262 |
T |
|
| Q |
201 |
aagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctacttctatcgtagttattccaccatcattaaactctaacactgcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3767261 |
aagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctacttctatcgtagttattccaccatcattaaactccaacactgcct |
3767162 |
T |
|
| Q |
301 |
ttg |
303 |
Q |
| |
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||| |
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| T |
3767161 |
ttg |
3767159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 3781398 - 3781164
Alignment:
| Q |
45 |
accataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagaca |
144 |
Q |
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|||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
3781398 |
accacaatgccttcccaacatttcctca---ctttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagaca |
3781302 |
T |
|
| Q |
145 |
cagttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtgg |
244 |
Q |
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| | |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| | ||||||| |
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| T |
3781301 |
ctttcgattttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatgacgtcttgagtgg |
3781202 |
T |
|
| Q |
245 |
aaaaaaccctacttctatcgtagttattccaccatcat |
282 |
Q |
| |
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|||||| || ||||| | | | ||||||||||||||| |
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| T |
3781201 |
aaaaaatccaacttcggttgcaattattccaccatcat |
3781164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 45 - 259
Target Start/End: Complemental strand, 3777082 - 3776874
Alignment:
| Q |
45 |
accataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagaca |
144 |
Q |
| |
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|||| |||| |||||||||||||||||| ||||||||||||||||||| || ||||| ||||||||| || ||||||| || ||||||| |||| | |
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| T |
3777082 |
accacaatgtcttccaaacatttcctca---ctttgttcttcttccttcttatctcttgtaacacactcacttcttcaac---attagaaaaagaagata |
3776989 |
T |
|
| Q |
145 |
cagttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtgg |
244 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
3776988 |
cctttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattggcatgacatagttagtgg |
3776889 |
T |
|
| Q |
245 |
aaaaaaccctacttc |
259 |
Q |
| |
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|||||| || ||||| |
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| T |
3776888 |
aaaaaatccaacttc |
3776874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 256
Target Start/End: Complemental strand, 3763000 - 3762802
Alignment:
| Q |
55 |
cttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgattt |
154 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||| | | | | ||||||||||| |||| || ||||||| |
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| T |
3763000 |
cttccaaacatttcctca---ctttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgattt |
3762904 |
T |
|
| Q |
155 |
tgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccct |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | ||| || |||||||||||| | |||||||| |||||| |
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| T |
3762903 |
tgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatgacatactaagtggaaataaccct |
3762804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 3752006 - 3751823
Alignment:
| Q |
73 |
tcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaac------ttcatcagaaaaacaagacacagttgattttgttcgtccaat |
166 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||| || | || | |||| |||||||||||| || ||||||||||||||||||| |
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| T |
3752006 |
tcactttgttcttcttccttctcctctcttgcaacactctcacttcaacatcattacaatcattagaaaaacaagaaacttttgattttgttcgtccaat |
3751907 |
T |
|
| Q |
167 |
agatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaa |
250 |
Q |
| |
|
||| ||||| |||||| ||||||||||||| ||||| ||||||||||||| ||| ||||||||||| || ||||||| ||||| |
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| T |
3751906 |
agaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaa |
3751823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 259
Target Start/End: Complemental strand, 3746107 - 3745997
Alignment:
| Q |
149 |
tgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaa |
248 |
Q |
| |
|
||||||||||||| ||||||| | ||| |||||| ||||||||| | ||||||||||||||||||| ||| | |||||||||||| ||||||||||| |
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| T |
3746107 |
tgattttgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaa |
3746008 |
T |
|
| Q |
249 |
aaccctacttc |
259 |
Q |
| |
|
||||||||||| |
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|
| T |
3746007 |
aaccctacttc |
3745997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 3755789 - 3755681
Alignment:
| Q |
148 |
ttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaa |
247 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| || ||| ||||||| ||||||||| ||||||||||||| ||| || ||||| ||||||||||||||||| |
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|
| T |
3755789 |
ttgaatttgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaa |
3755693 |
T |
|
| Q |
248 |
aaaccctacttc |
259 |
Q |
| |
|
|||||||||||| |
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|
| T |
3755692 |
aaaccctacttc |
3755681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 3771569 - 3771439
Alignment:
| Q |
126 |
tcatcagaaaaacaagacacagttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttatt |
225 |
Q |
| |
|
||||||||||| | ||||| |||| ||||||||||| ||||| ||||| || ||| ||||||| ||||||||| ||||||||||||| ||| || | |
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|
| T |
3771569 |
tcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctact |
3771473 |
T |
|
| Q |
226 |
ggcatgacatagtgagtggaaaaaaccctacttc |
259 |
Q |
| |
|
|||| || |||| |||||||||||||||| |||| |
|
|
| T |
3771472 |
ggcacgagatagcgagtggaaaaaaccctccttc |
3771439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 25985271 - 25985329
Alignment:
| Q |
201 |
aagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctacttc |
259 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||| |||| |
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|
| T |
25985271 |
aagctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttc |
25985329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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