View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_35 (Length: 319)
Name: NF20090_low_35
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 34579388 - 34579675
Alignment:
| Q |
16 |
atcaaaatcatatcattgatatggtaatcttggctatatattttaaagtaattattaactaaatacaccataaaaaataaagaataattataatagtaga |
115 |
Q |
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| T |
34579388 |
atcaaaatcatatcattgatatggtaatct-ggctatatattttaaagtaactattaactaaatacaccataaaaaataaagaataattataatagtaga |
34579486 |
T |
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| Q |
116 |
tgttgcagttgcttcttacctaaattaatatatttgtaccctaaagcagcaaggccagttgacaccattgcgtcggctgaaataataaagcaataaagtt |
215 |
Q |
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| T |
34579487 |
tgttgcagttgcttcttacctaaattaatatatttgtaccctaaagcagcaaggccagttgacaccattgcgtcggctgaaataataaagtaataaagtt |
34579586 |
T |
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| Q |
216 |
tatatcgatgaagttatgcatatctaagttgtaaacataataggtcggggtacatcatgataatgatacctgtatctcggattaaactt |
304 |
Q |
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| T |
34579587 |
tatatcgatgaaattatgcatatctaagttgtaaacataataggtcggggtacatcatgataatgatacctgtgtcttggattaaactt |
34579675 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 32602227 - 32602305
Alignment:
| Q |
132 |
tacctaaattaatatatttgtaccctaaagcagcaaggccagttgacaccattgcgtcggctgaaataataaagcaata |
210 |
Q |
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| T |
32602227 |
tacctaaattgatatacttgtaccctagggcagcaagtccagttgacaccattgcatcagctgaaatgataaatcaata |
32602305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 32592080 - 32592165
Alignment:
| Q |
132 |
tacctaaattaatatatttgtaccctaaagcagcaaggccagttgacaccattgcgtcggctgaaataataaagcaataaagttta |
217 |
Q |
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| T |
32592080 |
tacctaaattgatatacttgtatcctagggcagcaagtccagttgacaccatcgcatcagctgaaatgataaatcaatatagttta |
32592165 |
T |
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