View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_37 (Length: 311)

Name: NF20090_low_37
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_37
NF20090_low_37
[»] chr6 (6 HSPs)
chr6 (15-223)||(5164799-5165019)
chr6 (28-129)||(22350032-22350133)
chr6 (27-129)||(13879757-13879859)
chr6 (27-129)||(25942687-25942789)
chr6 (27-129)||(17693912-17694014)
chr6 (75-125)||(24432343-24432393)
[»] chr3 (10 HSPs)
chr3 (14-165)||(47881913-47882065)
chr3 (27-129)||(22625040-22625142)
chr3 (27-165)||(29912980-29913118)
chr3 (27-129)||(10097867-10097969)
chr3 (27-129)||(10204752-10204854)
chr3 (27-129)||(10611838-10611940)
chr3 (27-129)||(6304329-6304431)
chr3 (27-129)||(10898023-10898125)
chr3 (28-129)||(16458484-16458585)
chr3 (27-121)||(54189528-54189621)
[»] scaffold0256 (1 HSPs)
scaffold0256 (27-165)||(17343-17481)
[»] chr1 (3 HSPs)
chr1 (27-165)||(2400249-2400387)
chr1 (28-129)||(9522744-9522845)
chr1 (14-130)||(14998039-14998153)
[»] chr8 (7 HSPs)
chr8 (27-165)||(28891782-28891920)
chr8 (27-129)||(16756321-16756423)
chr8 (35-165)||(15945681-15945811)
chr8 (27-165)||(21038448-21038586)
chr8 (27-129)||(28328926-28329028)
chr8 (28-165)||(26269331-26269468)
chr8 (27-165)||(33033658-33033796)
[»] chr7 (5 HSPs)
chr7 (27-165)||(7070813-7070951)
chr7 (27-129)||(3323848-3323950)
chr7 (27-129)||(25352370-25352472)
chr7 (27-129)||(25406432-25406534)
chr7 (27-165)||(44015690-44015828)
[»] chr5 (4 HSPs)
chr5 (27-129)||(25446505-25446607)
chr5 (21-165)||(10628371-10628515)
chr5 (66-164)||(31781485-31781583)
chr5 (27-92)||(28788740-28788805)
[»] chr4 (3 HSPs)
chr4 (27-165)||(4559224-4559362)
chr4 (27-129)||(15313336-15313438)
chr4 (27-161)||(16633508-16633642)
[»] chr2 (6 HSPs)
chr2 (27-129)||(20053821-20053923)
chr2 (27-148)||(17933139-17933260)
chr2 (27-129)||(2737223-2737325)
chr2 (27-129)||(39681064-39681166)
chr2 (28-129)||(22716294-22716395)
chr2 (28-165)||(28456527-28456664)
[»] scaffold0023 (1 HSPs)
scaffold0023 (27-129)||(50267-50369)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 5165019 - 5164799
Alignment:
Q  15 ggaaatgaaaaagcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcactt 114  Q
    ||||||| |||||||||||||||| |||||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5165019 ggaaatggaaaagcaagaattccaagtcaaagtttaggtcgtagggtggtggtaataaaacaaagtacaaatgttttatttgtcacaatccatatcactt 5164920  T
Q  115 caagaaggattgtcctcatagaaacggcaatggaagtgatagttcatccgt------------ctgaatattgaataagggtaaactttttggaaaaatc 202  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||||             ||||||||||||||||||||||||||||||||||||    
T  5164919 caagaaggattgtcctcagagaaatggcaatggaagtggtagttcatccgttcagatattgaattgaatattgaataagggtaaactttttggaaaaatc 5164820  T
Q  203 gaagtaggtaagttgtgttag 223  Q
    || |||| |||||||||||||    
T  5164819 gatgtagataagttgtgttag 5164799  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 22350133 - 22350032
Alignment:
Q  28 caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgt 127  Q
    |||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22350133 caagaattccaggtcaaagtctaggtcgaagggtgatggaaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgt 22350034  T
Q  128 cc 129  Q
    ||    
T  22350033 cc 22350032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 13879757 - 13879859
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  13879757 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 13879856  T
Q  127 tcc 129  Q
    |||    
T  13879857 tcc 13879859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 25942687 - 25942789
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  25942687 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 25942786  T
Q  127 tcc 129  Q
    |||    
T  25942787 tcc 25942789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 17694014 - 17693912
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||  ||||| |||||    
T  17694014 gcaagaattccaggtcaaagtctaggtagaagggtgatggaaataaaacacagtacaaatgttttatttgtcacaatccaggtcactaaaagaaagattg 17693915  T
Q  127 tcc 129  Q
    |||    
T  17693914 tcc 17693912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 24432343 - 24432393
Alignment:
Q  75 caaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggatt 125  Q
    ||||||| ||||| ||| |||||||||| | ||||||||||||||||||||    
T  24432343 caaagtataaatgctttctttgtcacaaacaatgtcacttcaagaaggatt 24432393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 47882065 - 47881913
Alignment:
Q  14 aggaaatgaaaaag-caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcac 112  Q
    ||||||||| |||| |||||||||||||||||||||||||| | ||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  47882065 aggaaatgagaaaggcaagaattccaggtcaaagtctaggtcgaagggtggtggtaataaaacacagtacaaatgttttatttgtcacaatccaggtcac 47881966  T
Q  113 ttcaagaaggattgtcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||||||||||||||||  | ||||| ||||||| ||||| || | |||||||    
T  47881965 ttcaagaaggattgtccggagagaaaaggcaatgaaagtggtaatccatccgt 47881913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 22625142 - 22625040
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22625142 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattg 22625043  T
Q  127 tcc 129  Q
    |||    
T  22625042 tcc 22625040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 29913118 - 29912980
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  29913118 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaaaaaggattg 29913019  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||  | ||||| ||||||||| ||| || | |||||||    
T  29913018 tccggaaagaaagggcaatggaggtggtaatccatccgt 29912980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 10097969 - 10097867
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  10097969 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 10097870  T
Q  127 tcc 129  Q
    |||    
T  10097869 tcc 10097867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 10204854 - 10204752
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  10204854 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 10204755  T
Q  127 tcc 129  Q
    |||    
T  10204754 tcc 10204752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 10611940 - 10611838
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  10611940 gcaagaattccaggtcaaagtctaggtcgaagggtgatggaaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaagattg 10611841  T
Q  127 tcc 129  Q
    |||    
T  10611840 tcc 10611838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 6304329 - 6304431
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||| ||||||||    
T  6304329 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaaaaaggattg 6304428  T
Q  127 tcc 129  Q
    |||    
T  6304429 tcc 6304431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 10898023 - 10898125
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||| ||| || ||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10898023 gcaagaattccaggtcaaagtctaggtcgaaggctgatggcaataaaacatagtacaaatgttttatttgtcacaatccagctcacttcaagaaggattg 10898122  T
Q  127 tcc 129  Q
    |||    
T  10898123 tcc 10898125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 16458484 - 16458585
Alignment:
Q  28 caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgt 127  Q
    |||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  16458484 caagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatattttatttgtcataatccaggtcacttcaagaaggattgt 16458583  T
Q  128 cc 129  Q
    ||    
T  16458584 cc 16458585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 54189528 - 54189621
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaag 121  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| ||| |  ||||||||||||||    
T  54189528 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataat-ctggtcacttcaagaag 54189621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 17343 - 17481
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||  | |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17343 gcaagaattccaggtcaaagtctaggtcgaagggtggtgataataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattg 17442  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||  | ||||| ||||||||||||| || | |||||||    
T  17443 tccggagagaaagggcaatggaagtggtaatccatccgt 17481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 2400387 - 2400249
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  2400387 gcaagaattccaggtcaaagtctaggtcgaagggtggtggtaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggactg 2400288  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||  | ||||| ||||||||||||| || | |||||||    
T  2400287 tccggagagaaagggcaatggaagtggtaatccatccgt 2400249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 9522744 - 9522845
Alignment:
Q  28 caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgt 127  Q
    ||||||||| |||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  9522744 caagaattctaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgt 9522843  T
Q  128 cc 129  Q
    ||    
T  9522844 cc 9522845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 14998039 - 14998153
Alignment:
Q  14 aggaaatgaaaaag-caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcac 112  Q
    |||||||| ||||| |||||| | |||||||||||||| || | ||||||  ||| ||||||||||   |||||||||||||||||||| | || |||||    
T  14998039 aggaaatggaaaagacaagaaattcaggtcaaagtctatgtcgaagggtggtggtgataaaacaaa---caaatgttttatttgtcacacttcaggtcac 14998135  T
Q  113 ttcaagaaggattgtcct 130  Q
    ||||||||| ||||||||    
T  14998136 ttcaagaagaattgtcct 14998153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 28891782 - 28891920
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  28891782 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 28891881  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||  | ||||| | ||||||| ||| || |||||||||    
T  28891882 tccagagagaaaggacaatggaggtggtaattcatccgt 28891920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 16756423 - 16756321
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  16756423 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 16756324  T
Q  127 tcc 129  Q
    |||    
T  16756323 tcc 16756321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 15945681 - 15945811
Alignment:
Q  35 tccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcata 134  Q
    |||| ||||||| ||||||||  |||||  ||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| | |    
T  15945681 tccaagtcaaagcctaggttgacgggtggtggtgataaaacaaagtacacatgttttatttgtcacactccaggtcacttcaagaaggattgtcctgaga 15945780  T
Q  135 gaaacggcaatggaagtgatagttcatccgt 165  Q
    || | ||||||||||||| ||||||||||||    
T  15945781 gatatggcaatggaagtggtagttcatccgt 15945811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 21038448 - 21038586
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||    
T  21038448 gcaagaattccaggtcaaagtctaggtcgaagggtgatggaaataaaacatagtacaaatgttttatttgccataatccaggtcacttcaagaaggattg 21038547  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    | |  | ||||| ||||||||| ||| || | |||||||    
T  21038548 tacggagagaaagggcaatggaggtggtaatccatccgt 21038586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 28328926 - 28329028
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  28328926 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcactttaagaaggattg 28329025  T
Q  127 tcc 129  Q
    |||    
T  28329026 tcc 28329028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 26269468 - 26269331
Alignment:
Q  28 caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgt 127  Q
    ||||||||||||||||||||||||||   ||||||  |||||||||||   |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  26269468 caagaattccaggtcaaagtctaggtccaagggtggtggtaataaaacttggtacaaatgttttatttgtcacaatctaggtcacttcaagaaggattgt 26269369  T
Q  128 cctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    ||  | ||||  ||||||||||||| || | |||||||    
T  26269368 ccagagagaatgggcaatggaagtggtaatccatccgt 26269331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 33033658 - 33033796
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    |||||||||  ||||||||||||||||   ||||||  || ||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  33033658 gcaagaattttaggtcaaagtctaggtccaagggtggtggcaataaaacacaatacaaatgttttatttgtcgcaatccaagtcacttcaagaaggattg 33033757  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||  | ||||| ||||||||||||| || | |||||||    
T  33033758 tccggagagaaagggcaatggaagtggtaatccatccgt 33033796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 7070813 - 7070951
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  7070813 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 7070912  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||  | ||||| | ||||||| |||  |||||||||||    
T  7070913 tccggagagaaaggacaatggaggtggaagttcatccgt 7070951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 3323950 - 3323848
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  3323950 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 3323851  T
Q  127 tcc 129  Q
    |||    
T  3323850 tcc 3323848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 25352370 - 25352472
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  25352370 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 25352469  T
Q  127 tcc 129  Q
    |||    
T  25352470 tcc 25352472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 25406432 - 25406534
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  25406432 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 25406531  T
Q  127 tcc 129  Q
    |||    
T  25406532 tcc 25406534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 44015828 - 44015690
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||| ||||||||||||||||| | ||||||  |||||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  44015828 gcaagaatttcaggtcaaagtctaggtcgaagggtggtggtaataaaacacagtacaaatattttatttgtcacaatccaggccacttcaagaaggattg 44015729  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||  | ||||| ||||||||||||| || | |||||||    
T  44015728 tccggagagaaagggcaatggaagtggtaatccatccgt 44015690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 25446505 - 25446607
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25446505 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattg 25446604  T
Q  127 tcc 129  Q
    |||    
T  25446605 tcc 25446607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 10628371 - 10628515
Alignment:
Q  21 gaaaaagcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaa 120  Q
    ||||| ||||||||||||||||||||||||||| | ||||||  ||| ||||||||||||||||||||||||||||||||||   |  ||||||||||||    
T  10628371 gaaaaggcaagaattccaggtcaaagtctaggtcgaagggtggtggtcataaaacaaagtacaaatgttttatttgtcacaacatagatcacttcaagaa 10628470  T
Q  121 ggattgtcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||||||||| | || || ||||||||||||| || |||||||||    
T  10628471 ggattgtcctgagaggaagggcaatggaagtggtaattcatccgt 10628515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 31781583 - 31781485
Alignment:
Q  66 gtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatggaagtgatagttcatccg 164  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | | || || |||||||| |||| |||||||||||    
T  31781583 gtaataaaacaaagtacaaatgttttatttgtcacaatccaggtcacttcaagaatgattgtcatgagaggaagggcaatggcagtggtagttcatccg 31781485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 28788740 - 28788805
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgtttta 92  Q
    |||| |||||||| ||||||||||||| | ||| ||  |||||||||||| |||||||||||||||    
T  28788740 gcaaaaattccagatcaaagtctaggtcgaaggatggtggtaataaaacagagtacaaatgtttta 28788805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 4559224 - 4559362
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    |||||||||||| |||||||||||||| | ||||||  |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  4559224 gcaagaattccatgtcaaagtctaggtcgaagggtgttggtaataaaacacaatacaaatgttttatttgtcacaatccaggtcacttcaagaaggattg 4559323  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    |||  | ||||| ||||||||||||| || | |||||||    
T  4559324 tccagagagaaagggcaatggaagtggtaatccatccgt 4559362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 15313336 - 15313438
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    |||||||||||| |||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15313336 gcaagaattccaagtcaaagtctaggtcgaagggtgatggcaataaaacaaagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattg 15313435  T
Q  127 tcc 129  Q
    |||    
T  15313436 tcc 15313438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 16633508 - 16633642
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||| || |||||||||||||| | |||||   |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  16633508 gcaagaatttcatgtcaaagtctaggtcgaagggttgtggtaataaaataaagtacaaatgttttatttctcacaatccaggtcacttcaagaaagattg 16633607  T
Q  127 tcctcatagaaacggcaatggaagtgatagttcat 161  Q
    |||  | ||||| ||||||||||||| ||||||||    
T  16633608 tccaaagagaaagggcaatggaagtggtagttcat 16633642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 20053923 - 20053821
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20053923 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattg 20053824  T
Q  127 tcc 129  Q
    |||    
T  20053823 tcc 20053821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 17933139 - 17933260
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||| | | ||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17933139 gcaagaattccaggtcaaagtctagatcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattg 17933238  T
Q  127 tcctcatagaaacggcaatgga 148  Q
    |||  | ||||| |||||||||    
T  17933239 tccggaaagaaagggcaatgga 17933260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 2737223 - 2737325
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  2737223 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 2737322  T
Q  127 tcc 129  Q
    |||    
T  2737323 tcc 2737325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 39681064 - 39681166
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  39681064 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattg 39681163  T
Q  127 tcc 129  Q
    |||    
T  39681164 tcc 39681166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 22716395 - 22716294
Alignment:
Q  28 caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgt 127  Q
    |||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  22716395 caagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatattttatttgtcataatccaggtcacttcaagaaggattgt 22716296  T
Q  128 cc 129  Q
    ||    
T  22716295 cc 22716294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 28456664 - 28456527
Alignment:
Q  28 caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgt 127  Q
    ||||||||| |||||||||| ||||| |  |||||  |||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||    
T  28456664 caagaattctaggtcaaagtataggtcgaggggtggtggtaataaaacaaagtacaaattttttatttgtcacaatctaggtcacttcaagaatgattgt 28456565  T
Q  128 cctcatagaaacggcaatggaagtgatagttcatccgt 165  Q
    ||| | ||  | || |||||||||| ||||||||||||    
T  28456564 cctgagagggaaggaaatggaagtggtagttcatccgt 28456527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 50369 - 50267
Alignment:
Q  27 gcaagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattg 126  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  50369 gcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttattagtcataatccaggtcacttcaagaaggattg 50270  T
Q  127 tcc 129  Q
    |||    
T  50269 tcc 50267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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