View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_39 (Length: 304)

Name: NF20090_low_39
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_39
NF20090_low_39
[»] chr7 (7 HSPs)
chr7 (11-302)||(1986069-1986362)
chr7 (34-194)||(13417060-13417213)
chr7 (39-196)||(15572052-15572208)
chr7 (44-195)||(14076468-14076618)
chr7 (44-195)||(14386496-14386646)
chr7 (231-288)||(15572243-15572300)
chr7 (34-135)||(18514945-18515045)
[»] chr6 (5 HSPs)
chr6 (11-283)||(6947994-6948265)
chr6 (12-288)||(6921465-6921740)
chr6 (24-288)||(6943081-6943332)
chr6 (13-288)||(6935334-6935596)
chr6 (39-285)||(6954661-6954906)
[»] chr5 (1 HSPs)
chr5 (42-158)||(18964978-18965093)
[»] chr4 (1 HSPs)
chr4 (65-135)||(53774685-53774754)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 1986069 - 1986362
Alignment:
Q  11 cacagaaagagttggaacatcatgtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcac 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  1986069 cacagaaagagttggaacaccatgtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgt-ccccaaatcaagtgagataattac 1986167  T
Q  111 aagttgttcaactgtaagattcttcaaatgacaattatatcgatgacgaacacaccaactaatactactattcaaataaacaccatttctcacatactt- 209  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1986168 aagttgttcaactgtaagattcttcaaatgacaattatatcggtgacgaacacaccaactaatactactattcaaataaacaccatttctcacatactta 1986267  T
Q  210 --accaaaaggatgacacacttctaccacaggcaaacaatcaatttctctccaatcattatcacccaaagtaaaaactcttgcgtcagttgtaat 302  Q
      ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||    
T  1986268 ccaccaaaaggatgacacaccactaccacaggcaaacaatcaatttctctccaatcattataacccaaagtaaaaactcttacggcggttgtaat 1986362  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 13417060 - 13417213
Alignment:
Q  34 gtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaactgtaagattct 133  Q
    |||| ||||| |||||| ||||||| |||||||||||||||||| |||| | ||||||| ||||  ||||||||||||| |||||||| |||||          
T  13417060 gtagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtctcag-tccccaactcaaccgagataatcacaaattgttcaattgtaa------ 13417152  T
Q  134 tcaaatgacaattatatcgatgacgaacacaccaactaatactactattcaaataaacacc 194  Q
    ||||||||||||||||||| |||||  || ||||| |||||||| |||| |||||||||||    
T  13417153 tcaaatgacaattatatcggtgacgggcaaaccaattaatactattattgaaataaacacc 13417213  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 15572052 - 15572208
Alignment:
Q  39 tcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaactgtaagattcttcaaa 138  Q
    |||||||||||| ||||||| |||| | | ||| ||||| | ||||| |||||||||||| ||||| ||||||| ||||||||  |||||||||||||||    
T  15572052 tcttcatcacaacatcgaggtagcatcgattgtctatatgtttctgt-ccccaaatcaagcgagattatcacaaattgttcaatcgtaagattcttcaaa 15572150  T
Q  139 tgacaattatatcgatgacgaacacaccaactaatactactattcaaataaacaccat 196  Q
    ||||||| |||||| |||||  || ||||| || ||||| | ||||||||||| ||||    
T  15572151 tgacaataatatcgttgacgggcaaaccaattagtactattgttcaaataaactccat 15572208  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 14076618 - 14076468
Alignment:
Q  44 atcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaactgtaagattcttcaaatgaca 143  Q
    ||||||| || ||||||| ||||| ||||||||| |||| || |||||||||||||||||||||||||| ||| ||||  || ||||| ||| |||||||    
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtctcagt-ccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgaca 14076520  T
Q  144 attatatcgatgacgaacacaccaactaatactactattcaaataaacacca 195  Q
      |||| || ||||| ||  ||||||| | |||| || ||||||| ||||||    
T  14076519 tgtataacggtgacggaccaaccaacttaaactattactcaaatacacacca 14076468  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 14386646 - 14386496
Alignment:
Q  44 atcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaactgtaagattcttcaaatgaca 143  Q
    ||||||| || ||||||| ||||| ||||||||| |||| || |||||||||||||||||||||||||| ||| ||||  || ||||| ||| |||||||    
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtctcagt-ccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgaca 14386548  T
Q  144 attatatcgatgacgaacacaccaactaatactactattcaaataaacacca 195  Q
      |||| || ||||| ||  ||||||| | |||| || ||||||| ||||||    
T  14386547 tgtataacggtgacggaccaaccaacttaaactattactcaaatacacacca 14386496  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 15572243 - 15572300
Alignment:
Q  231 taccacaggcaaacaatcaatttctctccaatcattatcacccaaagtaaaaactctt 288  Q
    |||| |||| ||||||||||| ||||||||| | ||||||||||||||||| ||||||    
T  15572243 taccccaggaaaacaatcaatatctctccaaacgttatcacccaaagtaaatactctt 15572300  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 18514945 - 18515045
Alignment:
Q  34 gtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaactgtaagattct 133  Q
    |||| |||| || |||| ||||||||||||| |||||||||||| |||||| ||  ||||||||| |||| ||| |||  ||||||||  ||||||||||    
T  18514945 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctg-tcttcaaatcaagcgagacaataacatattgttcaatggtaagattct 18515043  T
Q  134 tc 135  Q
    ||    
T  18515044 tc 18515045  T

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Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 6947994 - 6948265
Alignment:
Q  11 cacagaaagagttggaacatcatgtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcac 110  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  6947994 cacagaaagagttggaacatcatgtagctcttcatcacaacatcgagggagcaacaaccgtgtatatctctctgt-ccccaaatcaagtgagatcatcac 6948092  T
Q  111 aagttgttcaactgtaagattcttcaaatgacaattatatcgatgacgaacacaccaactaatactactattcaaataaacaccatttctcacatactta 210  Q
    ||||||||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  6948093 aagttgttcaaccataagattcttcaaatgacaataatatcggtgacgaacacaccaactaatactactattcaaataaacaccgtctctcacatactta 6948192  T
Q  211 ccaaaaggatgacacacttctaccacaggcaaacaatcaatttctctccaatcattatcacccaaagtaaaaa 283  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948193 ccaaaaggatgactcaccactaccacaggcaaacaatcaatttctctccaatcattatcacccaaagtaaaaa 6948265  T

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Target: chr6; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 6921465 - 6921740
Alignment:
Q  12 acagaaagagttggaacatcatgtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcaca 111  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||    
T  6921465 acagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgt-ccccaaatcaagtgagatcatcaca 6921563  T
Q  112 agttgttcaactgtaagattcttcaaatgacaattatatcgatgacgaacacaccaactaatactactattcaaataaacaccatttctcacatacttac 211  Q
    | |||||||||  ||||||| ||||||||||||| |||||    ||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||    
T  6921564 aattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaacactacttttcaaataaacgccatttcgcacatacttac 6921663  T
Q  212 caaaaggatgacacacttctaccacaggcaaacaatcaatttctctccaatcattatcacccaaagtaaaaactctt 288  Q
    |||||||||||| |||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6921664 caaaaggatgacgcaccaataccacaggcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactctt 6921740  T

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Target: chr6; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 6943081 - 6943332
Alignment:
Q  24 ggaacatcatgtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaact 123  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| | ||||||| ||||||| |||||||||||||||||| ||||| | ||||||||||    
T  6943081 ggaaaatcatgtagctcttcatcacaacattgagggagcaacaattttgtatatgtctctgt-ccccaaatcaagtgagatcatcacgaattgttcaact 6943179  T
Q  124 gtaagattcttcaaatgacaattatatcgatgacgaacacaccaactaatactactattcaaataaacaccatttctcacatacttaccaaaaggatgac 223  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| |            ||||    
T  6943180 gtaagattcttcaaatgacaattatatcggtgacgaacacaccaactaatactacttttcaaataaacaccatttttcacattc------------tgac 6943267  T
Q  224 acacttctaccacaggcaaacaatcaatttctctccaatcattatcacccaaagtaaaaactctt 288  Q
    ||||   | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6943268 acaccaatgccacatgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactctt 6943332  T

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Target: chr6; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 6935334 - 6935596
Alignment:
Q  13 cagaaagagttggaacatcatgtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaa 112  Q
    |||||||||| ||||   ||||||| |||||||||||| |||||||||||||||| | |||| || ||||||| |||||||||||||||||| ||||| |    
T  6935334 cagaaagagtaggaaagccatgtagctcttcatcacaacatcgagggagcaacaattttgtacatgtctctgt-ccccaaatcaagtgagatcatcacga 6935432  T
Q  113 gttgttcaactgtaagattcttcaaatgacaattatatcgatgacgaacacaccaactaatactactattcaaataaacaccatttctcacatacttacc 212  Q
     |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| |||||| |         
T  6935433 attgttcgactgtaagattcttcaaatgacaattatatcggtaacgaacacaccaactaatactacttttcaaataaacaccatttttcacattc----- 6935527  T
Q  213 aaaaggatgacacacttctaccacaggcaaacaatcaatttctctccaatcattatcacccaaagtaaaaactctt 288  Q
           || |||||   | ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6935528 -------tggcacaccaatgccacttgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactctt 6935596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 285
Target Start/End: Original strand, 6954661 - 6954906
Alignment:
Q  39 tcttcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaactgtaagattcttcaaa 138  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||| || || |||||||||||| ||||||| || ||||||||||||||||||||||    
T  6954661 tcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgt-cctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaa 6954759  T
Q  139 tgacaattatatcgatgacgaacacaccaactaatactactattcaaataaacaccatttctcacatacttaccaaaaggatgacacacttctaccacag 238  Q
    ||||||| |||||| ||||| |||  |||| |||||||| |||||||||||||   || |||| || || |   | || ||||| ||||   | |||| |    
T  6954760 tgacaataatatcggtgacggacaacccaattaatactattattcaaataaactttatctctcgcaaacattaaagaacgatgatacaccaattccaccg 6954859  T
Q  239 gcaaacaatcaatttctctccaatcattatcacccaaagtaaaaact 285  Q
    | ||||||||||| ||||||||| |||||||||||||||||||||||    
T  6954860 ggaaacaatcaatatctctccaaacattatcacccaaagtaaaaact 6954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 18964978 - 18965093
Alignment:
Q  42 tcatcacaatatcgagggagcaacaactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaactgtaagattcttcaaatga 141  Q
    ||||||||| || ||||||| |||||||||||| || ||||  | ||||| |||||||||||||||||||| ||| ||||  | |||| ||||   ||||    
T  18964978 tcatcacaacatggagggagtaacaactgtgtaaatgtctccat-ccccagatcaagtgagataatcacaaattgctcaatcgaaagaatcttttgatga 18965076  T
Q  142 caattatatcgatgacg 158  Q
    |||||||| || |||||    
T  18965077 caattataacggtgacg 18965093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 53774754 - 53774685
Alignment:
Q  65 caactgtgtatatctctctgttccccaaatcaagtgagataatcacaagttgttcaactgtaagattcttc 135  Q
    ||||||||||||| ||||||| | |||||||||| || |||||||||| ||||||   |||||||||||||    
T  53774754 caactgtgtatatgtctctgt-ctccaaatcaagcgaaataatcacaaattgttcggttgtaagattcttc 53774685  T

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