View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_4 (Length: 534)

Name: NF20090_low_4
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_4
NF20090_low_4
[»] chr4 (4 HSPs)
chr4 (210-306)||(28335550-28335645)
chr4 (210-306)||(44787505-44787600)
chr4 (360-445)||(28335688-28335774)
chr4 (360-445)||(44787643-44787729)
[»] scaffold1526 (2 HSPs)
scaffold1526 (71-149)||(375-453)
scaffold1526 (254-306)||(539-591)
[»] chr2 (2 HSPs)
chr2 (71-149)||(3379059-3379137)
chr2 (254-306)||(3378922-3378974)
[»] chr8 (2 HSPs)
chr8 (73-149)||(44496326-44496402)
chr8 (254-306)||(44496188-44496240)
[»] scaffold0642 (2 HSPs)
scaffold0642 (74-149)||(4841-4916)
scaffold0642 (254-305)||(4731-4782)
[»] scaffold0345 (2 HSPs)
scaffold0345 (74-149)||(14754-14829)
scaffold0345 (254-305)||(14643-14694)
[»] scaffold0105 (2 HSPs)
scaffold0105 (74-149)||(24152-24227)
scaffold0105 (254-305)||(24287-24338)
[»] scaffold0016 (2 HSPs)
scaffold0016 (71-149)||(53058-53136)
scaffold0016 (254-306)||(53225-53277)
[»] chr1 (2 HSPs)
chr1 (228-301)||(41866005-41866078)
chr1 (482-517)||(47932944-47932979)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 28335550 - 28335645
Alignment:
Q  210 ttttgttgaagggtaataaaatcaatgaatttttgccacaaaattcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 306  Q
    ||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||| |||||||||||||| ||| | ||| |||||||||||||    
T  28335550 ttttgttgaagggtaatcaaatcaatgagtttttgccacaag-ttcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaaac 28335645  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 44787505 - 44787600
Alignment:
Q  210 ttttgttgaagggtaataaaatcaatgaatttttgccacaaaattcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 306  Q
    ||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||| |||||||||||||| ||| | ||| |||||||||||||    
T  44787505 ttttgttgaagggtaatcaaatcaatgagtttttgccacaag-ttcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaaac 44787600  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 28335688 - 28335774
Alignment:
Q  360 ttagaatca-aagcgtaatggtggcagtagagctataaaaggtacacagccagatttcactatagataaaatagaggaatgcagtca 445  Q
    ||||||||| |||| ||||||||||| |||||  |||||||||| ||    ||||||||| || |||||||||||||||||||||||    
T  28335688 ttagaatcagaagcataatggtggcaatagagagataaaaggtaaactattagatttcacaatggataaaatagaggaatgcagtca 28335774  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 44787643 - 44787729
Alignment:
Q  360 ttagaatca-aagcgtaatggtggcagtagagctataaaaggtacacagccagatttcactatagataaaatagaggaatgcagtca 445  Q
    ||||||||| |||| ||||||||||| |||||  |||||||||| ||    ||||||||| || |||||||||||||||||||||||    
T  44787643 ttagaatcagaagcataatggtggcaatagagagataaaaggtaaactattagatttcacaatggataaaatagaggaatgcagtca 44787729  T

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Target: scaffold1526 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 375 - 453
Alignment:
Q  71 acttgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 149  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  375 acttgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 453  T

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Target: scaffold1526; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 539 - 591
Alignment:
Q  254 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 306  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  539 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaac 591  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 3379137 - 3379059
Alignment:
Q  71 acttgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 149  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  3379137 acttgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 3379059  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 3378974 - 3378922
Alignment:
Q  254 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 306  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||    
T  3378974 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaataataaaac 3378922  T

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Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 44496402 - 44496326
Alignment:
Q  73 ttgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 149  Q
    ||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  44496402 ttgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 44496326  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 44496240 - 44496188
Alignment:
Q  254 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 306  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  44496240 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaac 44496188  T

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Target: scaffold0642 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 4916 - 4841
Alignment:
Q  74 tgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 149  Q
    |||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  4916 tgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 4841  T

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Target: scaffold0642; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 4782 - 4731
Alignment:
Q  254 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaa 305  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  4782 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 4731  T

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Target: scaffold0345 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 14829 - 14754
Alignment:
Q  74 tgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 149  Q
    |||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  14829 tgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 14754  T

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Target: scaffold0345; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 14694 - 14643
Alignment:
Q  254 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaa 305  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  14694 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 14643  T

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Target: scaffold0105 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 24152 - 24227
Alignment:
Q  74 tgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 149  Q
    |||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  24152 tgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 24227  T

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Target: scaffold0105; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 24287 - 24338
Alignment:
Q  254 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaa 305  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  24287 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 24338  T

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Target: scaffold0016 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 53058 - 53136
Alignment:
Q  71 acttgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 149  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||   |||||| ||||||||    
T  53058 acttgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataacttaatcgttacacaa 53136  T

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Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 53225 - 53277
Alignment:
Q  254 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 306  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  53225 tcaaattaggttagtaagactcataaaatgtgaaggaaatcaaagaataaaac 53277  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 41866005 - 41866078
Alignment:
Q  228 aaatcaatgaatttttgccacaaaattcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaat 301  Q
    |||||||||| | ||||||||||| ||||||| ||| || |||| || ||||||||||||| |||| |||||||    
T  41866005 aaatcaatgagtatttgccacaaagttcaaataaggctaataaggctaataaaatatgaagaaaaataaagaat 41866078  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 517
Target Start/End: Complemental strand, 47932979 - 47932944
Alignment:
Q  482 caccgtaaccaccgaccatctgccatagttccactt 517  Q
    |||||||||||| |||||||||||||||||||||||    
T  47932979 caccgtaaccactgaccatctgccatagttccactt 47932944  T

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