View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_42 (Length: 275)
Name: NF20090_low_42
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 6032810 - 6032552
Alignment:
| Q |
13 |
aatatgggtggaaacgaaagnnnnnnnnttaattgcatgctccatagatggtaatgtttacgttaaactagattttctgcattgcttgtagctgctattc |
112 |
Q |
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| T |
6032810 |
aatatgggtggaaacgaaagaaaaaaaattaattgcatgctccatagatggtaatgtttacgttaaactagattttctgcattgcttgtagctgctattc |
6032711 |
T |
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| Q |
113 |
taataactaatttaaccaaacatgccattgaaacatgttcaacatggacaaagctttttcgttgtaaatgtttatgtttcttagatggtaatgtttgctt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6032710 |
taataactaatttaaccaaacatgccattgaaacatgttcaacatggacaaagctttttcgttgtaaatgtttatgtttcttagatggtaatgtttgctt |
6032611 |
T |
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| Q |
213 |
acattaaacttgatgttctgcattgattatagctactctaataatatgaattaatccta |
271 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6032610 |
acattaaacttgatgttctgcattgattatatctactctaataatatgaattaatccta |
6032552 |
T |
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