View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_43 (Length: 272)

Name: NF20090_low_43
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_43
NF20090_low_43
[»] chr8 (3 HSPs)
chr8 (14-256)||(1089619-1089861)
chr8 (55-129)||(18964974-18965048)
chr8 (55-125)||(18952431-18952501)
[»] chr3 (2 HSPs)
chr3 (14-256)||(5129053-5129295)
chr3 (14-125)||(26569666-26569777)
[»] chr7 (1 HSPs)
chr7 (55-113)||(46841773-46841831)
[»] chr4 (1 HSPs)
chr4 (55-113)||(56290375-56290433)
[»] scaffold0004 (1 HSPs)
scaffold0004 (94-131)||(35895-35932)
[»] chr6 (1 HSPs)
chr6 (55-131)||(8366198-8366274)
[»] chr2 (1 HSPs)
chr2 (86-130)||(3216507-3216551)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 1089861 - 1089619
Alignment:
Q  14 atatacaactagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1089861 atatacaactagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 1089762  T
Q  114 ttatagcggccggcgcggacttttttgacagtagaggtggtaattatggtgtaaagctatttaaaatgccatttgtttttcattcatcaacacaagtttg 213  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1089761 ttatggcggccggcgcggccttttttgacagtagaggtggtaattatggtgtaaagctatttaaaatgccatttgtttttcattcatcaacacaagtttg 1089662  T
Q  214 atttttctcatacttaacattaattattacccagtaagcattg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1089661 atttttctcatacttaacattaattattacccagtaagcattg 1089619  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 18964974 - 18965048
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccgttatagcggccggcgc 129  Q
    |||||||||||||||| ||||| || |||  ||||  ||||||||||  |||||||||| |||||||||||||||    
T  18964974 ccgctttccccttctggcacgcaccgacgcggcctagcgcggtggtctagatttttccgctatagcggccggcgc 18965048  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 18952501 - 18952431
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccgttatagcggccg 125  Q
    |||||||||||||||| |||||||| |||  ||||  || |||||||  |||||||||| |||||||||||    
T  18952501 ccgctttccccttctgacacgcgccgacgcggcctagcgtggtggtctagatttttccgctatagcggccg 18952431  T

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Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 5129053 - 5129295
Alignment:
Q  14 atatacaactagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129053 atatacatctagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 5129152  T
Q  114 ttatagcggccggcgcggacttttttgacagtagaggtggtaattatggtgtaaagctatttaaaatgccatttgtttttcattcatcaacacaagtttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129153 ttatagcggccggcgcggacttttttgacagtagaggtggtaattatggtgtaaagctatttaaaatgccatttgtttttcattcatcaacacaagtttg 5129252  T
Q  214 atttttctcatacttaacattaattattacccagtaagcattg 256  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  5129253 atttttctcatacttaacattaattattacccagcaagcattg 5129295  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 26569777 - 26569666
Alignment:
Q  14 atatacaactagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 113  Q
    ||||||||| |||||||||||| |  |||||| | ||| ||||||||| | |||||| ||||| || |||  |||||  |||||||||||||||||||||    
T  26569777 atatacaaccagtacaagttattgttttactatttataggtccgcttttcacttctgacacgcaccgacgcggcctggtgcggtggtcctgatttttccg 26569678  T
Q  114 ttatagcggccg 125  Q
     |||||||||||    
T  26569677 ctatagcggccg 26569666  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 46841831 - 46841773
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 113  Q
    ||||||||| ||| |||||||||||||||  ||||| ||||||||||||||||||||||    
T  46841831 ccgctttccacttatgccacgcgccaacgcggcctggcgcggtggtcctgatttttccg 46841773  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 56290433 - 56290375
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 113  Q
    ||||||||| |||||| |||||||| |||  |||||  |||||||||||||||||||||    
T  56290433 ccgctttccacttctgacacgcgccgacgcggcctggtgcggtggtcctgatttttccg 56290375  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 35895 - 35932
Alignment:
Q  94 cggtggtcctgatttttccgttatagcggccggcgcgg 131  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  35895 cggtggtcctgatttttccgctatagcggtcggcgcgg 35932  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 8366198 - 8366274
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccgttatagcggccggcgcgg 131  Q
    ||||||||| |||||| || | ||| |||  |||||  ||||||||||||||||||||  ||||||||| |||||||    
T  8366198 ccgctttccacttctgacatgtgccgacgcggcctggtgcggtggtcctgatttttccactatagcggctggcgcgg 8366274  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 3216551 - 3216507
Alignment:
Q  86 gcctgtcgcggtggtcctgatttttccgttatagcggccggcgcg 130  Q
    ||||| |||||||||||||||||||| | |||||| |||||||||    
T  3216551 gcctggcgcggtggtcctgatttttctgctatagcagccggcgcg 3216507  T

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