View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20090_low_45 (Length: 269)
Name: NF20090_low_45
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 38210726 - 38210667
Alignment:
| Q |
85 |
taaagtataacctccaaaagtaatcattccgttttataagtgtctcgttcaaaagaattc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38210726 |
taaagtataacctccaaaagtaatcattctgttttataagtgtctcgttcaaaagaattc |
38210667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 38211945 - 38211899
Alignment:
| Q |
39 |
caggaagtttacgatttttaagttgagtactcgagactataaagtat |
85 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38211945 |
caggaagtttgcgattttcaagttgagtactcgagactataaagtat |
38211899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 38210604 - 38210566
Alignment:
| Q |
206 |
gtaacgtcattcttactaattaaaacgggtatttgtacc |
244 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38210604 |
gtaatgtcattcttactaattaaaacgggtatttgtacc |
38210566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University