View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_52 (Length: 253)
Name: NF20090_low_52
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 49276502 - 49276747
Alignment:
| Q |
5 |
gatgtcgaagaatatagtttgaagaggaatgaacttcttacaaaagtttgagnnnnnnnnnnntgcaaagatgaagggcttctgaatttctttgaagtat |
104 |
Q |
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| T |
49276502 |
gatgtagaaaaatatagtttgaagaggaatgaacttcttacaaaagtttga---aaaaaaaaatgcaaagatgaagggcttttgaatttctttgaagtat |
49276598 |
T |
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| Q |
105 |
gannnnnnncaactgagaaaaggggtcatggacttaaaagtgaaaatgtaaattattttacacggacatcaaattagagctaagaattcggcatttattn |
204 |
Q |
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| T |
49276599 |
gatttttttcaactgagaaaagtggtcatggacttaaaagtgaaaatgtaaattattttacacggacatcaaattagagctaagaattcggcatttattt |
49276698 |
T |
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| Q |
205 |
nnnnnntggatgtaatatatgcttcggtgacaatacaatgatgtgtttt |
253 |
Q |
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| T |
49276699 |
aaaaaatggatgtaatatatgcttaggtgacaatacgatgatgtgtttt |
49276747 |
T |
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