View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_54 (Length: 250)
Name: NF20090_low_54
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 46047369 - 46047131
Alignment:
| Q |
1 |
ttcctatcttccgtggtggttgtcgagtagaaaacatcaaaagccaaaaacctcaaatgggtgttcaacaaattcttcacctgattctgttacgagggaa |
100 |
Q |
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| T |
46047369 |
ttcctatcttccgtggtggttgtcgagtagaaaacatcaaaagccaaaaacctcaaatgggtgttcaacaaattcttcacctgattctgttacgagggaa |
46047270 |
T |
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| Q |
101 |
tcatcaaatgttttgagatttccttttgttaatgaggaaattgtgccttccacttcaagaaaggtgaaggacgaacgacatagtagggaagaggcgaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46047269 |
tcatcaaatgttttgagatttccttttgttaatgaggaaattgtgccttccacttcaagaaaggtgaaggacgaacgacatagtagggaagaggcgaaaa |
46047170 |
T |
|
| Q |
201 |
ttgataaggaatgtgattttgttatcgttccgtttgatg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
46047169 |
ttgataaggaatgtgattttgttatcgttccgtttgatg |
46047131 |
T |
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