View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_55 (Length: 247)

Name: NF20090_low_55
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_55
NF20090_low_55
[»] chr3 (4 HSPs)
chr3 (16-230)||(24401955-24402169)
chr3 (23-230)||(24379151-24379358)
chr3 (23-227)||(24414211-24414415)
chr3 (23-227)||(24419546-24419750)
[»] chr5 (1 HSPs)
chr5 (25-231)||(42362365-42362571)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 24402169 - 24401955
Alignment:
Q  16 atgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttcctggtgtagcatctccaaaagat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24402169 atgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttcctggtgtagcatctccaaaagat 24402070  T
Q  116 gcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggattgattctccgctggaggagact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24402069 gcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggattgattctccgctggaggagact 24401970  T
Q  216 cgagagtgtcctttg 230  Q
    |||||||||||||||    
T  24401969 cgagagtgtcctttg 24401955  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 24379358 - 24379151
Alignment:
Q  23 ataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttcctggtgtagcatctccaaaagatgcatatc 122  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24379358 ataatgcaaacattggcaaggtcaataagccagtaaggctcataaaacccaaaccctgtcaagagatttcctggtgtagcatttccaaaagctgcatatc 24379259  T
Q  123 caaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggattgattctccgctggaggagactcgagagt 222  Q
    |||||||||| |||||||||||||||||||||||||||   |||| || || ||||||||||||||||| ||||||||| | |||||||||||| |||||    
T  24379258 caaagcctccacaacatatgtagaagaatgttgtaatggagattgccatcatggaggcctttttcatggtttgattctctggtggaggagactctagagt 24379159  T
Q  223 gtcctttg 230  Q
    ||||||||    
T  24379158 gtcctttg 24379151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 24414415 - 24414211
Alignment:
Q  23 ataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttcctggtgtagcatctccaaaagatgcatatc 122  Q
    ||||| ||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24414415 ataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttcctggtgtagcatctccaaaagctgcatatc 24414316  T
Q  123 caaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggattgattctccgctggaggagactcgagagt 222  Q
    |||||| ||| || |||| ||||||||||||||||||||  ||||  |||| ||| ||||||||||| | ||||||||| | |||||||||||| || ||    
T  24414315 caaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctctggtggaggagactctagtgt 24414216  T
Q  223 gtcct 227  Q
    |||||    
T  24414215 gtcct 24414211  T

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Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 24419546 - 24419750
Alignment:
Q  23 ataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttcctggtgtagcatctccaaaagatgcatatc 122  Q
    ||||| ||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24419546 ataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttcctggtgtagcatctccaaaagctgcatatc 24419645  T
Q  123 caaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggattgattctccgctggaggagactcgagagt 222  Q
    |||||| ||| || |||| ||||||||||||||||||||  ||||  |||| ||| ||||||||||| | ||||||||| | |||||||||||| || ||    
T  24419646 caaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctctggtggaggagactctagtgt 24419745  T
Q  223 gtcct 227  Q
    |||||    
T  24419746 gtcct 24419750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 42362571 - 42362365
Alignment:
Q  25 aatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttcctggtgtagcatctccaaaagatgcatatcca 124  Q
    ||||||| |||| |||| |||||  ||||| || || |||||||| ||||| ||||||||||| |||||||| ||   || |||||||| |||||||||     
T  42362571 aatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcctggagtttgatttccaaaagctgcatatccg 42362472  T
Q  125 aagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggattgattctccgctggaggagactcgagagtgt 224  Q
    |||| | | ||||||| |||||||||||||||||| |  ||||  | || |||||||||||||||||  |  || || |||||||||||||| |||||||    
T  42362471 aagcatgcacaacataggtagaagaatgttgtaatcaagattgcaatcatggaggcctttttcatggtcttgttttctgctggaggagactctagagtgt 42362372  T
Q  225 cctttgt 231  Q
    |||||||    
T  42362371 cctttgt 42362365  T

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