View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_57 (Length: 236)
Name: NF20090_low_57
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12032101 - 12032322
Alignment:
| Q |
1 |
aatgatttaaccctaaacataaaaagaaaatctaaagtagatatttgagtacccttttttgcgaatccatcctctaaaacagccaattctgtcagaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12032101 |
aatgatttaaccctaaacataaaaagaaaatctaaagtagatatttgagtacccttttttgcgaatccatcctctaaaacagcccattctgtcagaattt |
12032200 |
T |
|
| Q |
101 |
ctcacttttttaatcaaagaaatcacacttgagttgaagtggcaatagaaaattagaacgatgttgtcaccaatattcctccaaagaaaggtgattgtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12032201 |
ctcacttttttaatcaaagaaatcacacttgagttgaagtggaaatagaaaattagaacgatgttgtcaccaataatcctccaaagaaaggtgattgtag |
12032300 |
T |
|
| Q |
201 |
atgacgacaagaaattaaaaac |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
12032301 |
atgacgacaagaaattaaaaac |
12032322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 12053181 - 12053395
Alignment:
| Q |
5 |
atttaaccctaaacataaaaagaaaatctaaagtagatatttgagtacccttttttgcgaatccatcctctaaaacagccaattctgtcagaatttctca |
104 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||| |||||||||| ||||| || |||||||| | ||||||| ||| | || || ||||||| |
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| T |
12053181 |
atttaaccctaaacatgaaaataaaatctaaagtagatctttgagtaccgtttttataga-tccatccttttgaacagcccattatatcggagtttctca |
12053279 |
T |
|
| Q |
105 |
cttttttaatcaaagaaatcacacttgagttgaagtggcaatagaaaattagaacgatgttgtcaccaatattcctccaaagaaaggtgattgtagatga |
204 |
Q |
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| T |
12053280 |
cttttttaatcaaagaaattacactcgagttgaagttgaaatagaaaaatagaacgatgttgtcaccaataatcctccaaagaaaggagattgtagatga |
12053379 |
T |
|
| Q |
205 |
cgacaagaaattaaaa |
220 |
Q |
| |
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|||||||||||||||| |
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| T |
12053380 |
cgacaagaaattaaaa |
12053395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 12042391 - 12042516
Alignment:
| Q |
95 |
gaatttctcacttttttaatcaaagaaatcacacttgagttgaagtggcaatagaaaattagaacgatgttgtcaccaatattcctccaaagaaaggtga |
194 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| || ||| |||| ||||||||| || |||||||||| || |
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| T |
12042391 |
gaatttctcacttttttaatcaaagaaatcacacttgagtcgaagttgacatagaaaaataaaacaatgtcttcaccaataaaccaccaaagaaagcaga |
12042490 |
T |
|
| Q |
195 |
ttgtagatgacgacaagaaattaaaa |
220 |
Q |
| |
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|||||||||| ||||||||||||||| |
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| T |
12042491 |
ttgtagatgaagacaagaaattaaaa |
12042516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 12060205 - 12060422
Alignment:
| Q |
2 |
atgatttaaccctaaacataaaaagaaaatctaaagtagatatttgagtacccttttt-tgcgaatccatcctctaaaacagccaattctgtcagaattt |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| || ||||| |||| | ||| ||| ||| ||| ||||||| ||| ||| |||||| |
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| T |
12060205 |
atgatttaaccctaaacataaacataaaatctaaagtatatttttgaataccgtgtttatgccg--ccaaccttctgaacagcccattatgttggaattt |
12060302 |
T |
|
| Q |
101 |
ctcacttttttaatcaaagaaatcacacttgagttgaagtggcaatagaaaattagaacgatgttgtcaccaatattcctccaaagaaaggtgattgtag |
200 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||||| | |||||||| || ||| |||| ||||||||| | ||||||||||| |||||||| |
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| T |
12060303 |
ttcacttttttaatcaaagaaatcacactcgagtcgaagttgacatagaaaaataaaaccatgtcatcaccaataaacaaccaaagaaaggagattgtag |
12060402 |
T |
|
| Q |
201 |
atgacgacaagaaattaaaa |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
12060403 |
atgacgacaagaaattaaaa |
12060422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 19109516 - 19109388
Alignment:
| Q |
3 |
tgatttaaccctaaacataaaaagaaaatctaaagtagatatttgagtacccttt-tttgcgaatccatcctctaaaac-agccaattctgtcagaattt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| ||| |||||| | | ||||| ||| |||| | ||| |||| ||| |||| |||||| |
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| T |
19109516 |
tgatttaaccctaaaca-aaaaagaaaatttaaagtagattttttagtaccgtgtctttgc--atctgtccttttgaaccagcccattttgtcggaattt |
19109420 |
T |
|
| Q |
101 |
ctcacttttttaatcaaagaaatcacacttga |
132 |
Q |
| |
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|| |||||||||||||||||||| |||||||| |
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| T |
19109419 |
cttacttttttaatcaaagaaattacacttga |
19109388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 19123489 - 19123364
Alignment:
| Q |
2 |
atgatttaaccctaaacataaaaagaaaatctaaagtagatatttgagtacccttttttgcgaatccatcctctaaaacagccaattctgtcagaatttc |
101 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||| ||| ||||| |||||| || || |||| | |||| || ||||| |||||||||| |
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| T |
19123489 |
atgatttaaccaaaaaca-aaaaagaaaatcttaagtagatttttttgtaccattttttttga-tctgtccttttgaacaacccattctatcagaatttc |
19123392 |
T |
|
| Q |
102 |
tcacttttttaatcaaagaaatcacact |
129 |
Q |
| |
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| |||||||||||||||||||| ||||| |
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|
| T |
19123391 |
ttacttttttaatcaaagaaattacact |
19123364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12042298 - 12042336
Alignment:
| Q |
1 |
aatgatttaaccctaaacataaaaagaaaatctaaagta |
39 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
12042298 |
aatgatttaaccctaaacataaacagaaaatctaaagta |
12042336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 19144419 - 19144380
Alignment:
| Q |
90 |
tgtcagaatttctcacttttttaatcaaagaaatcacact |
129 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||| |
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| T |
19144419 |
tgtcggaatttctcacttttttaatcaaagaaattacact |
19144380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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