View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20090_low_59 (Length: 233)
Name: NF20090_low_59
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 51686999 - 51687204
Alignment:
| Q |
12 |
gataatactaataactaaccaaacatattttcattgcatttgtattactacaaaccaaacatggcaaaaggtggaaagctaatgaagctaaaatcagcac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51686999 |
gataatactaataactaaccaaacatattttcattgcatttgtattactacaaaccaaacatggcaaaaggtggaaagctaatgaagctaaaatcagcac |
51687098 |
T |
|
| Q |
112 |
tcaaaaaatggaactcatttggaaacggaaaacagagccgtcacagcatcagcgccgtcgccgacgaagactcatcgtcttcaagatccgacctccacac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51687099 |
tcaaaaaatggaactcatttggaaacggaaaacagagccgtcacagcatcagcgccgtcgccgacgaagactcatcgtcttcaagatccgacctccacac |
51687198 |
T |
|
| Q |
212 |
cgtctt |
217 |
Q |
| |
|
|||||| |
|
|
| T |
51687199 |
cgtctt |
51687204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University