View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_61 (Length: 227)
Name: NF20090_low_61
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_61 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2102894 - 2102669
Alignment:
| Q |
1 |
tatgatcatacacaattctcaaatgttggtataattgttttcaagtttcaacctcgacctttttagttttcccgagcaaagtacaatcaagagaggcaac |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
2102894 |
tatgatcatacacaattctcaaatgttggtctaattgttttcaagtttcaacctcgacctttttagttttccagagcaaaacacaatcaagagaggcaac |
2102795 |
T |
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| Q |
101 |
aatttgacaaaacattttcttcattgtgtcaataaacaaaatagtccaaatgagacaaagtgtataccctaggaacatgttcaacacggacagacttgaa |
200 |
Q |
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| T |
2102794 |
aatttgacaaa-cattttcttcattgtgtcaataaacaaaatagtccaaatgagacaaagtgtataccctaggaacatgttcaacacggacggacttgaa |
2102696 |
T |
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| Q |
201 |
gttactcttcagctccacagcctcatt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2102695 |
gttactcttcagctccacagcctcatt |
2102669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 39182901 - 39183018
Alignment:
| Q |
110 |
aaacattttcttcattgtgtcaataaacaaaatagtccaaatgagacaaagtgtataccctaggaacatgttcaacacggacagacttgaagttactctt |
209 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |
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| T |
39182901 |
aaacattttcttcattgtgtcaacaaacaaaatagtccaaatgagacaaagtgtataccctaggaacatgttcgacactgactgacttgaagttactctt |
39183000 |
T |
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| Q |
210 |
cagctccacagcctcatt |
227 |
Q |
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| T |
39183001 |
cagctccacagcctcatt |
39183018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 39182803 - 39182868
Alignment:
| Q |
46 |
tttcaacctcgacctttttagttttcccgagcaaagtacaatcaagagaggcaacaatttgacaaa |
111 |
Q |
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|||||||||| |||||||| ||||||| ||| || |||||||||||||| ||||||||||||| |
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| T |
39182803 |
tttcaacctcaacctttttggttttccagagaaacacacaatcaagagaggtgacaatttgacaaa |
39182868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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