View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_7 (Length: 464)
Name: NF20090_low_7
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 42716390 - 42716082
Alignment:
| Q |
16 |
cttccatcttcatatgttaactttatagatggcagttacatttttaattacattaaccacaccaagtaatgatcttgttattttgtttcaagcttgatga |
115 |
Q |
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| T |
42716390 |
cttccatcttcatatgttaactttatagatggcagttacatttttaattacattaaccacaccaagtaatgattttgttattttgtttcaagcttgatga |
42716291 |
T |
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| Q |
116 |
attctacctagttttgatttcggatttggattgtttgcggtcagagttcagtgcaatcatgtagtcatgatatcaatagctattggatcaagattggacg |
215 |
Q |
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| T |
42716290 |
attctacctagttttgatttcggatttggattgtttgcggtcagagttcagtgcaatcatgtagtcatgatatcaatagctattggatcaagattggacg |
42716191 |
T |
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| Q |
216 |
gtacataatttaggctcagtttaaaatatgtatcgtcttatattgatccaaccatccactaatatcaagactgcacgagatttcaacaacattcattcca |
315 |
Q |
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| T |
42716190 |
gtacataatttaggctcagtttaaaatatgtatcgtcttatattgatccaaccatccactaatatcaagactgcacgagatttcaacaacattcattcca |
42716091 |
T |
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| Q |
316 |
aaacctttg |
324 |
Q |
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| T |
42716090 |
aaacctttg |
42716082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 379 - 448
Target Start/End: Complemental strand, 42716027 - 42715958
Alignment:
| Q |
379 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagc |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42716027 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagc |
42715958 |
T |
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