View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_9 (Length: 429)

Name: NF20090_low_9
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_9
NF20090_low_9
[»] chr8 (9 HSPs)
chr8 (16-416)||(19472509-19472909)
chr8 (16-416)||(19543434-19543834)
chr8 (16-416)||(19588862-19589262)
chr8 (107-416)||(3785816-3786124)
chr8 (261-392)||(31909148-31909281)
chr8 (261-396)||(3479031-3479167)
chr8 (302-416)||(3788526-3788642)
chr8 (194-261)||(4678008-4678075)
chr8 (261-293)||(15232220-15232252)
[»] chr1 (3 HSPs)
chr1 (107-416)||(12684936-12685230)
chr1 (208-416)||(16385488-16385705)
chr1 (206-261)||(20225661-20225716)
[»] chr7 (8 HSPs)
chr7 (206-355)||(26389105-26389253)
chr7 (260-416)||(2576965-2577122)
chr7 (261-392)||(18446570-18446701)
chr7 (207-301)||(1773701-1773795)
chr7 (315-393)||(1715751-1715832)
chr7 (314-416)||(1773550-1773657)
chr7 (371-416)||(26389252-26389297)
chr7 (260-302)||(26387891-26387933)
[»] scaffold0016 (1 HSPs)
scaffold0016 (261-415)||(48375-48533)
[»] chr5 (3 HSPs)
chr5 (260-413)||(4215218-4215372)
chr5 (261-416)||(18587389-18587553)
chr5 (321-413)||(37498232-37498327)
[»] chr2 (1 HSPs)
chr2 (261-396)||(20509153-20509288)
[»] chr6 (2 HSPs)
chr6 (262-416)||(21146845-21147003)
chr6 (261-416)||(33638804-33638960)
[»] chr4 (4 HSPs)
chr4 (193-261)||(55849590-55849658)
chr4 (261-416)||(46432428-46432584)
chr4 (208-266)||(15040073-15040130)
chr4 (208-266)||(15114294-15114351)
[»] chr3 (6 HSPs)
chr3 (194-261)||(24595142-24595209)
chr3 (206-261)||(51308736-51308791)
chr3 (206-259)||(20871258-20871311)
chr3 (351-416)||(51306409-51306473)
chr3 (308-416)||(51308823-51308935)
chr3 (362-418)||(27462198-27462253)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 19472909 - 19472509
Alignment:
Q  16 gttggaagtttgtttttatcctatgcaactgaagtattattgaggttatacatctgctggaaagttgttttggttagtagctggtctgcaggttccttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19472909 gttggaagtttgtttttatcctatgcaactgaagtattattgaggttatacatctgctggaaagttgttttggttagtagctggtctgcaggttccttgt 19472810  T
Q  116 atgaagattgaagagcaagttctgtttggaagctttctctaatggttttgaagctttgtattggtcacannnnnnnnctgtttggtgtttgctttgtaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  19472809 atgaagattgaagagcaagttctgtttggaagctttctctaatggttttgaagctttgtattggtcacattttttttctgtttggtgtttgctttgtaat 19472710  T
Q  216 tcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgta 315  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19472709 tcaaactcaagctaagagttctcttaccttgagtttgagggaggctgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgta 19472610  T
Q  316 gtcactatatcagtcacaagttgactcttttgtaactctttcacttttgtatcatttcaactattatcaatataataatttcctaagctttttctctcta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  19472609 gtcactatatcagtcacaagttgactcttttgtaactctttcacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctcta 19472510  T
Q  416 t 416  Q
    |    
T  19472509 t 19472509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 19543834 - 19543434
Alignment:
Q  16 gttggaagtttgtttttatcctatgcaactgaagtattattgaggttatacatctgctggaaagttgttttggttagtagctggtctgcaggttccttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19543834 gttggaagtttgtttttatcctatgcaactgaagtattattgaggttatacatctgctggaaagttgttttggttagtagctggtctgcaggttccttgt 19543735  T
Q  116 atgaagattgaagagcaagttctgtttggaagctttctctaatggttttgaagctttgtattggtcacannnnnnnnctgtttggtgtttgctttgtaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  19543734 atgaagattgaagagcaagttctgtttggaagctttctctaatggttttgaagctttgtattggtcacattttttttctgtttggtgtttgctttgtaat 19543635  T
Q  216 tcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgta 315  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19543634 tcaaactcaagctaagagttctcttaccttgagtttgagggaggctgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgta 19543535  T
Q  316 gtcactatatcagtcacaagttgactcttttgtaactctttcacttttgtatcatttcaactattatcaatataataatttcctaagctttttctctcta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  19543534 gtcactatatcagtcacaagttgactcttttgtaactctttcacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctcta 19543435  T
Q  416 t 416  Q
    |    
T  19543434 t 19543434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 19588862 - 19589262
Alignment:
Q  16 gttggaagtttgtttttatcctatgcaactgaagtattattgaggttatacatctgctggaaagttgttttggttagtagctggtctgcaggttccttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19588862 gttggaagtttgtttttatcctatgcaactgaagtattattgaggttatacatctgctggaaagttgttttggttagtagctggtctgcaggttccttgt 19588961  T
Q  116 atgaagattgaagagcaagttctgtttggaagctttctctaatggttttgaagctttgtattggtcacannnnnnnnctgtttggtgtttgctttgtaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  19588962 atgaagattgaagagcaagttctgtttggaagctttctctaatggttttgaagctttgtattggtcacattttttttctgtttggtgtttgctttgtaat 19589061  T
Q  216 tcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgta 315  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19589062 tcaaactcaagctaagagttctcttaccttgagtttgagggaggctgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgta 19589161  T
Q  316 gtcactatatcagtcacaagttgactcttttgtaactctttcacttttgtatcatttcaactattatcaatataataatttcctaagctttttctctcta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  19589162 gtcactatatcagtcacaagttgactcttttgtaactctttcacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctcta 19589261  T
Q  416 t 416  Q
    |    
T  19589262 t 19589262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 107 - 416
Target Start/End: Complemental strand, 3786124 - 3785816
Alignment:
Q  107 gttccttgtatgaagattgaagagcaagttctgtttggaagctttctctaatggttttgaagctttgtattggtcacannnnnnnnctgtttggtgtttg 206  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||| |||| |||||| || |||          ||||||| |||| |    
T  3786124 gttccttgtatgaagattgaagagcaacctctatttggaagctttctcttatggttt-gaagatttgtaatgatcattttttttttctgtttg-tgttag 3786027  T
Q  207 ctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttgaaatataggtagtaatactcattttagagttagttaagggt 306  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  3786026 ctttgtaattcaaactcaagctaagagttctctttccttgagtttgaggaaggctgttgaaatatagatagtgatactcattttagagttagtt-agggt 3785928  T
Q  307 actagtgtagtcactatatcagtcacaagttgactcttttgta--actctttcacttttgtatcatttcaactattatcaatataataatttcctaagct 404  Q
    |||| | |||||||||||| |||||||||||||||| ||||||  ||| ||| | | |||||||||||||||||||||||||| ||||||||||||||||    
T  3785927 actactatagtcactatataagtcacaagttgactcatttgtatcacttttttattcttgtatcatttcaactattatcaatacaataatttcctaagct 3785828  T
Q  405 ttttctctctat 416  Q
    | ||||||||||    
T  3785827 tcttctctctat 3785816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 392
Target Start/End: Complemental strand, 31909281 - 31909148
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 356  Q
    ||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  31909281 tgttgaaatatagatagtaatactcattttagagtaagttaa-ggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 31909183  T
Q  357 cacttttgtatcatttcaactattatcaatataata 392  Q
    || ||||||||| |||||||||| ||||||| ||||    
T  31909182 ca-ttttgtatcttttcaactatcatcaatacaata 31909148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 396
Target Start/End: Original strand, 3479031 - 3479167
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta--actctttca 358  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||| |||| ||||| ||| || |||||||||||||||| ||||||   ||||||||    
T  3479031 tgttgaaatatagatagttatactcattttagagttagtt-agggtattagtttagtccctacataagtcacaagttgactcatttgtaccgctctttca 3479129  T
Q  359 cttttgtatcatttcaactattatcaatataataattt 396  Q
    || ||| ||| |||||||||||||||||| | ||||||    
T  3479130 ctgttgcatcttttcaactattatcaatacagtaattt 3479167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 416
Target Start/End: Complemental strand, 3788642 - 3788526
Alignment:
Q  302 agggtactagtgtagtcactatatcagtcacaagttgactcttttgta--actctttcacttttgtatcatttcaactattatcaatataataatttcct 399  Q
    ||||||||||| |||||||| ||| |||||||||||||| | ||||||  ||| ||||| | |||||||||||||||||||||||||| |||||||| ||    
T  3788642 agggtactagtatagtcactgtataagtcacaagttgacccatttgtatcactttttcattcttgtatcatttcaactattatcaatacaataattttct 3788543  T
Q  400 aagctttttctctctat 416  Q
    || ||| ||||||||||    
T  3788542 aaacttcttctctctat 3788526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 4678008 - 4678075
Alignment:
Q  194 tgtttggtgtttgctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggct 261  Q
    |||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  4678008 tgtttgctgttagctttgtaattcaaattcaagctaagagttctcttaccttgagtttgagggaggct 4678075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 15232220 - 15232252
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttaga 293  Q
    |||||||||||||||||| ||||||||||||||    
T  15232220 tgttgaaatataggtagttatactcattttaga 15232252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 107 - 416
Target Start/End: Original strand, 12684936 - 12685230
Alignment:
Q  107 gttccttgtatgaagattgaagagcaagttctgtttggaagctttctctaatggttttgaagctttgtattggtcacannnnnnnnctgtttggtgtttg 206  Q
    |||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||| |||| |||||||||||||||         ||||||||||| |    
T  12684936 gttccttgcatgaagattgaagagcaaattctgcttggaagctttctcttatggttt-gaagatttgtattggtcacatttttt---tgtttggtgttag 12685031  T
Q  207 ctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttgaaatataggtagtaatactcattttagagttagttaagggt 306  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||    
T  12685032 ctttgtaattcaaactcaagttaagagttctcttaccttgagtttgagggaggctgttgaaatatagttagttatactcattttagagttagtt-agtgt 12685130  T
Q  307 actagtgtagtcactatatcagtcacaagttgactcttttgta--actctttcacttttgtatcatttcaactattatcaatataataatttcctaagct 404  Q
    || |||            |||||||| ||||||||||||||||   |||||| |||||| ||||||||  ||||||||||||||||||| || ||||||     
T  12685131 acgagt------------tcagtcactagttgactcttttgtatctctctttaacttttatatcattttcactattatcaatataataactttctaagcc 12685218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 208 - 416
Target Start/End: Original strand, 16385488 - 16385705
Alignment:
Q  208 tttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttgaaatatagg--------tagtaatactcattttagagttagt 299  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||| |||||| ||||||||||||         |||| ||||||||||||||||||||    
T  16385488 tttgtaattcaaactcaagttaatagttatcttaccttgagtttgatggaggcagttgaaatatagtcatatagatagttatactcattttagagttagt 16385587  T
Q  300 taagggtactagtgtagtcactatatcagtcacaagttgactcttttgt--aactctttcacttttgtatcatttcaactattatcaatataataatttc 397  Q
    || |||||||||| |||||||| ||| |||||||||||||||| |||||  | |||||||| |||||||||||||   |||| ||||||| ||||| ||     
T  16385588 ta-gggtactagtttagtcactgtataagtcacaagttgactcatttgtacatctctttcatttttgtatcattttccctataatcaatacaataacttt 16385686  T
Q  398 ctaagctttttctctctat 416  Q
     |||||||||||| |||||    
T  16385687 gtaagctttttctttctat 16385705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 20225716 - 20225661
Alignment:
Q  206 gctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggct 261  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  20225716 gctttgtaattcaaactcaatctaagagttctcttaccttgagtttgagggaggct 20225661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 206 - 355
Target Start/End: Original strand, 26389105 - 26389253
Alignment:
Q  206 gctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttgaaatataggtagtaatactcattttagagttagttaaggg 305  Q
    |||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |    
T  26389105 gctttgtaatccatactcaagctaagagttctcttaccttgagtttgagggaggctgttgaaatataggtagttatactcattttagagttagtt-agtg 26389203  T
Q  306 tactagtgtagtcactatatcagtcacaagttgactcttttgtaactctt 355  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| |||||    
T  26389204 tactagtttagtcactatataagtcacaagttgactcttttgtatctctt 26389253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 260 - 416
Target Start/End: Original strand, 2576965 - 2577122
Alignment:
Q  260 ctgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta--actctttc 357  Q
    |||||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||  ||| ||||    
T  2576965 ctgttgaaatatagatagtgatactcattttagagttagtta-gggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttc 2577063  T
Q  358 acttttgtatcatttcaactattatcaatataataatttcctaagctttttctctctat 416  Q
    | | |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||    
T  2577064 attcttgtatcatttcaactattatcaatacaataattttctaagcttcttctctctat 2577122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 392
Target Start/End: Original strand, 18446570 - 18446701
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaact--ctttca 358  Q
    ||||||||||||| |||| |||||||||||||||||||||| | | ||||||  ||||||||||| |||||| |||||| ||||| ||| ||  ||||||    
T  18446570 tgttgaaatatagttagttatactcattttagagttagtta-gtgcactagttcagtcactatataagtcactagttgattcttt-gtatctttctttca 18446667  T
Q  359 cttttgtatcatttcaactattatcaatataata 392  Q
    ||||||||||||||||||||||||||||| ||||    
T  18446668 cttttgtatcatttcaactattatcaatacaata 18446701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 1773795 - 1773701
Alignment:
Q  207 ctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttgaaatataggtagtaatactcattttagagttagtta 301  Q
    ||||||||| ||||||||| ||||||||| | ||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  1773795 ctttgtaatccaaactcaaactaagagttcttttaccttgaatttgtgggagtctgttgaattataggtagttatactcattttagagttagtta 1773701  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 1715832 - 1715751
Alignment:
Q  315 agtcactatatcagtcacaagttgactcttttgtaactct---ttcacttttgtatcatttcaactattatcaatataataa 393  Q
    ||||||||||| ||| || |||||||||||||||| ||||   ||||||||| ||||||||||||||||||||||| |||||    
T  1715832 agtcactatataagttactagttgactcttttgtatctctcttttcacttttatatcatttcaactattatcaatacaataa 1715751  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 416
Target Start/End: Complemental strand, 1773657 - 1773550
Alignment:
Q  314 tagtcactatatcagtcaca-agttgactcttttgtaactctttcacttttgtat----catttcaactattatcaatataataatttcctaagcttttt 408  Q
    |||||||||||| ||||||| ||||||||| |||||| |||||||| ||||||||    |||||| ||||||||||||| ||||| ||  |||||||||     
T  1773657 tagtcactatattagtcacagagttgactcatttgtatctctttcatttttgtatatatcatttctactattatcaatacaataactttgtaagctttta 1773558  T
Q  409 ctctctat 416  Q
    ||||||||    
T  1773557 ctctctat 1773550  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 26389252 - 26389297
Alignment:
Q  371 ttcaactattatcaatataataatttcctaagctttttctctctat 416  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||    
T  26389252 ttcaactattatcaatacaataattttctaagttttttctctctat 26389297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 26387891 - 26387933
Alignment:
Q  260 ctgttgaaatataggtagtaatactcattttagagttagttaa 302  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||    
T  26387891 ctgttgaaatataagtagttatactcattttaaagttagttaa 26387933  T

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Target: scaffold0016 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 261 - 415
Target Start/End: Original strand, 48375 - 48533
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaact---ctttc 357  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    ||||    
T  48375 tgttgaaatataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttc 48474  T
Q  358 acttttgtatcatttcaactattatcaatataataatttcctaagcttt-ttctctcta 415  Q
    | |||||||||  |||||| |||||||||| |||||||| ||||||||| |||||||||    
T  48475 aattttgtatcccttcaacaattatcaatacaataattttctaagctttcttctctcta 48533  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 260 - 413
Target Start/End: Original strand, 4215218 - 4215372
Alignment:
Q  260 ctgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaactct---tt 356  Q
    |||||||||||||| |||| |||||||||| ||||||||||| | | ||||||  ||||||||||| |||||  |||||||||||||||| ||||   ||    
T  4215218 ctgttgaaatatagttagttatactcattt-agagttagtta-gtgcactagttgagtcactatataagtcattagttgactcttttgtatctctctttt 4215315  T
Q  357 cacttttgtatcatttcaactattatcaatataataatttcctaagctttttctctc 413  Q
    ||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  4215316 cacttttatatcatttcaactattatcaatacaataactttctaagctttttctctc 4215372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 416
Target Start/End: Complemental strand, 18587553 - 18587389
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaa-gttgactcttttgta---actcttt 356  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||||||   || ||||||| |||||||| ||||| || ||||||   |||||||    
T  18587553 tgttgaaatataggtagttatacttattttagagttagtt-agggtactagttaggttactatataagtcacaaggttgattcatttgtaccgactcttt 18587455  T
Q  357 ca-ct------tttgtatcatttcaactattatcaatataataatttcctaagctttttctctctat 416  Q
    || ||      |||||||||||| |||||| |||||||||| | ||| ||||| |||||||||||||    
T  18587454 catctttcatctttgtatcattttaactatcatcaatataa-atttttctaagttttttctctctat 18587389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 413
Target Start/End: Complemental strand, 37498327 - 37498232
Alignment:
Q  321 tatatcagtcacaagttgactcttttgtaac---tctttcacttttgtatcatttcaactattatcaatataataatttcctaagctttttctctc 413  Q
    ||||| |||||||||||||||| |||||| |   ||||| |||||| ||||||||||||||| ||||||| |||||| | ||||| ||||||||||    
T  37498327 tatataagtcacaagttgactcatttgtaccccttcttttacttttatatcatttcaactatcatcaatacaataatcttctaagttttttctctc 37498232  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 396
Target Start/End: Complemental strand, 20509288 - 20509153
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta--actctttca 358  Q
    |||| ||||||| ||||| |||||||||||||||||||||| |||||||||| |||||| ||||| ||| |||||||||||| ||| ||   ||||||||    
T  20509288 tgttaaaatataagtagttatactcattttagagttagttaggggtactagtttagtcaatatataagttacaagttgactcatttatatctctctttca 20509189  T
Q  359 cttttgtatcatttcaactattatcaatataataattt 396  Q
     ||||||||  ||||||||| |||| ||||||||||||    
T  20509188 tttttgtat--tttcaactagtatcgatataataattt 20509153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 416
Target Start/End: Complemental strand, 21147003 - 21146845
Alignment:
Q  262 gttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcacta--tatcagtcacaagttgactcttttgtaactct---tt 356  Q
    |||||||||||| |||| |||||||||||| ||||||||| |||||||||| | |||| |   ||| ||||||| |||||||| |||||| ||||   ||    
T  21147003 gttgaaatatagatagttatactcattttaaagttagtta-gggtactagttttgtcaatgactataagtcacatgttgactcatttgtacctctctttt 21146905  T
Q  357 cacttttgtatcatttcaactattatcaatataataatttcctaagctttttctctctat 416  Q
    || | ||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||    
T  21146904 cattcttgtatcatttcaactattttcaatacaataattttctaagttttttctctctat 21146845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 416
Target Start/End: Complemental strand, 33638960 - 33638804
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaactct---ttc 357  Q
    |||||||||||||| ||| ||||| |||||||||||||||| | ||| |||| || ||  ||||| ||||| ||||||||||||||||| ||||   ||     
T  33638960 tgttgaaatatagg-agttatacttattttagagttagtta-gtgtattagtttaatcgttatataagtcataagttgactcttttgtatctctctttta 33638863  T
Q  358 acttttgtatcatttcaactattatcaatataataatttcctaagctttttctctctat 416  Q
    |||||||||||  ||||| ||||||||| | |||||||| | ||| |||||||||||||    
T  33638862 acttttgtatctcttcaattattatcaagacaataattttcaaagttttttctctctat 33638804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 55849658 - 55849590
Alignment:
Q  193 ctgtttggtgtttgctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggct 261  Q
    ||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  55849658 ctgtttgctgttagctttgtaattcaaactcaagctaagagttatcttaccttgagtttgagggaggct 55849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 416
Target Start/End: Original strand, 46432428 - 46432584
Alignment:
Q  261 tgttgaaatataggtagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaac--tctttca 358  Q
    |||| |||| ||| |||| |||||||||||||||||||||| | | |||| | |||||||  ||  |||||| ||||||||||||| || |  |||||||    
T  46432428 tgttaaaatgtagttagttatactcattttagagttagtta-gtgcactaatttagtcaccgtaaaagtcactagttgactcttttatatccctctttca 46432526  T
Q  359 cttttgtatcatttcaactattatcaatataataatttcctaagctttttctctctat 416  Q
    ||||||||||||||  ||||||||||||| ||||||||  ||||||||| ||||||||    
T  46432527 cttttgtatcatttttactattatcaatacaataattttgtaagcttttcctctctat 46432584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 15040130 - 15040073
Alignment:
Q  208 tttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttga 266  Q
    |||||| ||||||||||||| |||| || |||||||||||||||||||| || ||||||    
T  15040130 tttgtatttcaaactcaagc-aagaattctcttaccttgagtttgaggggggatgttga 15040073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 15114294 - 15114351
Alignment:
Q  208 tttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggctgttga 266  Q
    |||||| ||||||||||||| |||| || |||||||||||||||||||| || ||||||    
T  15114294 tttgtatttcaaactcaagc-aagaattctcttaccttgagtttgaggggggatgttga 15114351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 24595142 - 24595209
Alignment:
Q  194 tgtttggtgtttgctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggct 261  Q
    |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24595142 tgtttgctgttagctttgtaattcaaactcaagctaagagttatcttaccttgagtttgagggaggct 24595209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 51308736 - 51308791
Alignment:
Q  206 gctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggaggct 261  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  51308736 gctttgtagttcaaactcaagttaagagttctcttaccttgagtttgagggaggct 51308791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 20871258 - 20871311
Alignment:
Q  206 gctttgtaattcaaactcaagctaagagttgtcttaccttgagtttgagggagg 259  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  20871258 gctttgtaatccaaactcaagttaagagttctcttaccttgagtttgagggagg 20871311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 51306409 - 51306473
Alignment:
Q  351 ctctttcacttttgtatcatttcaactattatcaatataataatttcctaagctttttctctctat 416  Q
    |||||| | ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  51306409 ctcttttatttttgtatcattttaactattatcaatacaataattt-ctaagctttttctctctat 51306473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 51308823 - 51308935
Alignment:
Q  308 ctagtgtagtcactatatcagtcacaag-ttgactcttttgtaa----ctctttcacttttgtatcatttcaactattatcaatataataatttcctaag 402  Q
    |||||||||| ||||||| ||||||| | ||||||| ||||||     |||||| | | |||||||||||||||||||||||||| ||||||||  ||||    
T  51308823 ctagtgtagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcatttcaactattatcaatacaataattt-ataag 51308921  T
Q  403 ctttttctctctat 416  Q
    ||||||||||||||    
T  51308922 ctttttctctctat 51308935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 27462198 - 27462253
Alignment:
Q  362 ttgtatcatttcaactattatcaatataataatttcctaagctttttctctctatat 418  Q
    |||||||||||||||||| ||||||| |||| ||| | |||| ||||||||||||||    
T  27462198 ttgtatcatttcaactataatcaatacaatagttttccaagc-ttttctctctatat 27462253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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