View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20091_high_1 (Length: 463)
Name: NF20091_high_1
Description: NF20091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20091_high_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 163 - 463
Target Start/End: Complemental strand, 24373940 - 24373635
Alignment:
| Q |
163 |
agaattcgataggcaaat----ttgtttacgagtgcaatttgacattctattaacaagtacaattatgtagtttatttttacggaagtacaattgtttag |
258 |
Q |
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| T |
24373940 |
agaattcgataggcaaatgtttttgtttacaagtacaatttgacattctattaacaggtacaattgtgtagtttatttttacggaagtacaattgtttag |
24373841 |
T |
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| Q |
259 |
ttctatgcacacgccgcaattattttcaattttaatttttaactcagtattatatac-annnnnnnaaggaagtattgtagacatttctggttgtttatg |
357 |
Q |
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| T |
24373840 |
ttctatgcacacgccgcaattattttcaactttaatttttaactcagtattatatacaatttttttaaggaagtattgtagacatttttggttgtttatg |
24373741 |
T |
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| Q |
358 |
gttagttggttactatgaacatgtattaactttgaggactcgtgaatgaaggtgctcgtnnnnnnntaagctttggcaaaatatgttgaatctgtgctgc |
457 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| ||| |
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| T |
24373740 |
gttagttggttactatcaacatgtattaactttgaggactcgtgaatgaaggtgctcgtaaaaaaataagctttgtcaaaatatgttgaatttgtggtgc |
24373641 |
T |
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| Q |
458 |
tcctca |
463 |
Q |
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| |||| |
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| T |
24373640 |
tactca |
24373635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 24374118 - 24373958
Alignment:
| Q |
18 |
cttatttcttcttcagtttcttatccctcgttcgcttttactatcttctctgttacttctttccattaatattcattccatcaataaagtgttattttta |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24374118 |
cttatttcttcttcagtttcttatcccttgttcgcttatactatcttctctgttacttctttctattaatattcattccatcaataaagtgttattttta |
24374019 |
T |
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| Q |
118 |
aattccattcatcttctttcatacatgtttgtttcactccaacatagaattcgataggcaa |
178 |
Q |
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| T |
24374018 |
aattccattcatcttctttcatacatgtttgtttcactccaacatagaattcgataggcaa |
24373958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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