View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20092_low_1 (Length: 760)

Name: NF20092_low_1
Description: NF20092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20092_low_1
NF20092_low_1
[»] chr4 (15 HSPs)
chr4 (54-177)||(4843578-4843701)
chr4 (54-175)||(5171972-5172099)
chr4 (582-682)||(5181476-5181576)
chr4 (583-689)||(5159249-5159355)
chr4 (346-448)||(5172211-5172314)
chr4 (98-173)||(5194651-5194726)
chr4 (582-633)||(5194831-5194882)
chr4 (583-644)||(4843278-4843339)
chr4 (19-59)||(4843723-4843763)
chr4 (19-59)||(5171911-5171951)
chr4 (543-581)||(4843423-4843461)
chr4 (186-220)||(4843509-4843543)
chr4 (547-581)||(5172102-5172136)
chr4 (648-682)||(5172339-5172373)
chr4 (19-59)||(5155319-5155357)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 5e-61; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 4843701 - 4843578
Alignment:
Q  54 atttattctgtttgagaaattcagacattgtttttgcagtttgtttataaatcatattctcaatagaggctctaagttaatgagtttacaatctctaatt 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4843701 atttattctgtttgagaaattcagacattgtttttgcagtttgtttataaatcatattctcaatagaggctctaagttaatgagtttacaatctttaatt 4843602  T
Q  154 aaattcaataaaataattctaagt 177  Q
    ||||||||||||||||||||||||    
T  4843601 aaattcaataaaataattctaagt 4843578  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 5171972 - 5172099
Alignment:
Q  54 atttattctgtttgagaaattcagacattgttt------ttgcagtttgtttataaatcatattctcaatagaggctctaagttaatgagtttacaatct 147  Q
    |||||||||||||||||||||||||||||||||      | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5171972 atttattctgtttgagaaattcagacattgtttaggagttagcagtttgtttataaatcatattctcaatagaggctctaagttaatgagtttacaatct 5172071  T
Q  148 ctaattaaattcaataaaataattctaa 175  Q
     |||||||||||||||||||||||||||    
T  5172072 ttaattaaattcaataaaataattctaa 5172099  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 582 - 682
Target Start/End: Original strand, 5181476 - 5181576
Alignment:
Q  582 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaatt 681  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  5181476 ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaatttctcatctaggattctccaagaatt 5181575  T
Q  682 t 682  Q
    |    
T  5181576 t 5181576  T

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Target: chr4; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 583 - 689
Target Start/End: Original strand, 5159249 - 5159355
Alignment:
Q  583 catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaattt 682  Q
    ||||| ||||||||||||||||  |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5159249 cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatttgtcatctaggattctccaagaattt 5159348  T
Q  683 tagactt 689  Q
     ||||||    
T  5159349 gagactt 5159355  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 346 - 448
Target Start/End: Original strand, 5172211 - 5172314
Alignment:
Q  346 gtaatgaatggtaaagtttcacaaggttgaacaccaatgtgatattg-ctattgttgaaacccaatggtgaaatgaacgggagcttttgtatttcctaag 444  Q
    |||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  5172211 gtaatgaatggtgaagtttcataaggttgatcaccaatgtgatattggctattgttgaaacccaatggtgaaatgaaccggagcttttgtatttcctaac 5172310  T
Q  445 atag 448  Q
    ||||    
T  5172311 atag 5172314  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 5194651 - 5194726
Alignment:
Q  98 ttataaatcatattctcaatagaggctctaagttaatgagtttacaatctctaattaaattcaataaaataattct 173  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5194651 ttataaatcatattctcaatagaaactctaagttaatgagtttacaatctctaattaaattcaataaaataattct 5194726  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 582 - 633
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
Q  582 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5194831 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc 5194882  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 583 - 644
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
Q  583 catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt 644  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  4843339 cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt 4843278  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 4843763 - 4843723
Alignment:
Q  19 tatggttacaaagaaacacaaaatttattaccactatttat 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4843763 tatggttacaaagaaacacaaaatttattaccactatttat 4843723  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 5171911 - 5171951
Alignment:
Q  19 tatggttacaaagaaacacaaaatttattaccactatttat 59  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  5171911 tatggttacaaaggaacacaaaatttattaccactatttat 5171951  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 4843461 - 4843423
Alignment:
Q  543 gaaaaaatatgttttgtcactctccacataatactcttt 581  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  4843461 gaaaaaatatggtttgccactctccacataatactcttt 4843423  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 4843543 - 4843509
Alignment:
Q  186 tagtatttattctcatgattattagtagtggtcga 220  Q
    |||||||| ||||||||||||||||||||||||||    
T  4843543 tagtatttcttctcatgattattagtagtggtcga 4843509  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 581
Target Start/End: Original strand, 5172102 - 5172136
Alignment:
Q  547 aaatatgttttgtcactctccacataatactcttt 581  Q
    |||||||||||| ||||||||||||||||||||||    
T  5172102 aaatatgttttgccactctccacataatactcttt 5172136  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 648 - 682
Target Start/End: Original strand, 5172339 - 5172373
Alignment:
Q  648 ataccaatttgtcatctaggattctccaagaattt 682  Q
    |||||||||||||||| ||||||||||||||||||    
T  5172339 ataccaatttgtcatcaaggattctccaagaattt 5172373  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 5155319 - 5155357
Alignment:
Q  19 tatggttacaaagaaacacaaaatttattaccactatttat 59  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  5155319 tatggttacaaagaaaca--aaatttattaccactatttat 5155357  T

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