View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20092_low_2 (Length: 454)
Name: NF20092_low_2
Description: NF20092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20092_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 4843578 - 4843701
Alignment:
| Q |
278 |
acttagaattattttattgaatttaattagagattgtaaactcattaacttagagcctctattgagaatatgatttataaacaaactgcaaaaacaatgt |
377 |
Q |
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| T |
4843578 |
acttagaattattttattgaatttaattaaagattgtaaactcattaacttagagcctctattgagaatatgatttataaacaaactgcaaaaacaatgt |
4843677 |
T |
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| Q |
378 |
ctgaatttctcaaacagaataaat |
401 |
Q |
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| T |
4843678 |
ctgaatttctcaaacagaataaat |
4843701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 401
Target Start/End: Complemental strand, 5172099 - 5171972
Alignment:
| Q |
280 |
ttagaattattttattgaatttaattagagattgtaaactcattaacttagagcctctattgagaatatgatttataaacaaactgcaa------aaaca |
373 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
5172099 |
ttagaattattttattgaatttaattaaagattgtaaactcattaacttagagcctctattgagaatatgatttataaacaaactgctaactcctaaaca |
5172000 |
T |
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| Q |
374 |
atgtctgaatttctcaaacagaataaat |
401 |
Q |
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| T |
5171999 |
atgtctgaatttctcaaacagaataaat |
5171972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 5172314 - 5172211
Alignment:
| Q |
7 |
ctatcttaggaaatacaaaagctcccgttcatttcaccattgggtttcaacaatag-caatatcacattggtgttcaaccttgtgaaactttaccattca |
105 |
Q |
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| T |
5172314 |
ctatgttaggaaatacaaaagctccggttcatttcaccattgggtttcaacaatagccaatatcacattggtgatcaaccttatgaaacttcaccattca |
5172215 |
T |
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| Q |
106 |
ttac |
109 |
Q |
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|||| |
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| T |
5172214 |
ttac |
5172211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 5194726 - 5194651
Alignment:
| Q |
282 |
agaattattttattgaatttaattagagattgtaaactcattaacttagagcctctattgagaatatgatttataa |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5194726 |
agaattattttattgaatttaattagagattgtaaactcattaacttagagtttctattgagaatatgatttataa |
5194651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 4843723 - 4843763
Alignment:
| Q |
396 |
ataaatagtggtaataaattttgtgtttctttgtaaccata |
436 |
Q |
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| T |
4843723 |
ataaatagtggtaataaattttgtgtttctttgtaaccata |
4843763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 5171951 - 5171911
Alignment:
| Q |
396 |
ataaatagtggtaataaattttgtgtttctttgtaaccata |
436 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5171951 |
ataaatagtggtaataaattttgtgttcctttgtaaccata |
5171911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 4843509 - 4843543
Alignment:
| Q |
235 |
tcgaccactactaataatcatgagaataaatacta |
269 |
Q |
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| T |
4843509 |
tcgaccactactaataatcatgagaagaaatacta |
4843543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 5155357 - 5155319
Alignment:
| Q |
396 |
ataaatagtggtaataaattttgtgtttctttgtaaccata |
436 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |
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| T |
5155357 |
ataaatagtggtaataaattt--tgtttctttgtaaccata |
5155319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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