View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20093_high_18 (Length: 303)
Name: NF20093_high_18
Description: NF20093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20093_high_18 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 52985679 - 52985393
Alignment:
| Q |
16 |
agcggtggaaatgggtggcgatgaatactgtagaaaagtgtggtgtggcggagatacaatagaatctgtgtttatgtgagaaagaataaattnnnnnnnc |
115 |
Q |
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| T |
52985679 |
agcggtggaaatgggtggcgatgaatactgtagaaaagtgtggtgtggcggagatacggtagaatttgtgtttatgtgagaaagaagaaattaaaaaaac |
52985580 |
T |
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| Q |
116 |
ctaattcccaattttgaaactgtgagagtttggttttgattgtggaagttgaaatcagaaatgnnnnnnnntaaaatagtggagaagtatgaggagaggg |
215 |
Q |
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| T |
52985579 |
ctaattccatattttgaaactgtgagagtttggttttgattgtgaaagttgaaatcagaaatgaaaaaaaa-aaaacagtggagaagtatgaggagaggg |
52985481 |
T |
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| Q |
216 |
agaagtgagtttaaggacacatggggagagaactccaggtttacgaaggaggaaggacaaagggaaaaatgttgaagatggaagttgt |
303 |
Q |
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| T |
52985480 |
agaagtgagtttaaggacacatggggagagaactctaggtttacgaaggaggaaggacaaagggaaaaatgttgaagatgaaagttgt |
52985393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 127 - 303
Target Start/End: Complemental strand, 12384750 - 12384579
Alignment:
| Q |
127 |
ttttgaaactgtgagagtttgg-ttttgattgtggaagttgaaatcagaaatgnnnnnnnntaaaatagtggagaagtatgaggagagggagaagtgagt |
225 |
Q |
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| T |
12384750 |
ttttgaagttgtgagagtttggattttgattgtggaagttgaaatcagaaatgaaa------aaaacagtggagaagtaggaggagagggagaagtgagt |
12384657 |
T |
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| Q |
226 |
ttaaggacacatggggagagaactccaggtttacgaaggaggaaggacaaagggaaaaatgttgaagatggaagttgt |
303 |
Q |
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| T |
12384656 |
ttaaggacacatggggtgaggactccaggtttatgaaggaggaagaacaaagggaaaaatgttgaagatggaagttgt |
12384579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 127 - 303
Target Start/End: Complemental strand, 14455484 - 14455312
Alignment:
| Q |
127 |
ttttgaaactgtgagagtttgg-ttttgattgtggaagttgaaatcagaaatgnnnnnnnntaaaatagtggagaagtatgaggagagggagaagtgagt |
225 |
Q |
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| T |
14455484 |
ttttgaagttgtgagagtttggattttgattgtggaagttgaaatcagaaatgaaa------aaaacagtggagaagtaggaggagagggagaagtgagt |
14455391 |
T |
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| Q |
226 |
ttaaggacacatgggga-gagaactccaggtttacgaaggaggaaggacaaagggaaaaatgttgaagatggaagttgt |
303 |
Q |
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| T |
14455390 |
ttaaggacacatgggggtgaggactccaggtttatgaaggaggaagaacaaagggaaaaatgttgaagatggaagttgt |
14455312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 139 - 303
Target Start/End: Original strand, 18704016 - 18704176
Alignment:
| Q |
139 |
gagagtttgg-ttttgattgtggaagttgaaatcagaaatgnnnnnnnntaaaatagtggagaagtatgaggagagggagaagtgagtttaaggacacat |
237 |
Q |
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| T |
18704016 |
gagagtttggattttgattgtggaagttgaaatcagaaatgaaa------aaaacagtggagaagttggaggagagggagaagtgagtttaaggacacat |
18704109 |
T |
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| Q |
238 |
gggga-gagaactccaggtttacgaaggaggaaggacaaagggaaaaatgttgaagatggaagttgt |
303 |
Q |
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| T |
18704110 |
gggggtgaggactccaggtttatgaaggaggaagaacaaagggaaaaatgttgaagatggaagttgt |
18704176 |
T |
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