View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20093_high_1_N (Length: 437)

Name: NF20093_high_1_N
Description: NF20093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20093_high_1_N
NF20093_high_1_N
[»] chr8 (11 HSPs)
chr8 (136-399)||(11949335-11949597)
chr8 (232-398)||(12289395-12289561)
chr8 (225-353)||(12482729-12482857)
chr8 (226-398)||(12483004-12483176)
chr8 (13-148)||(11949636-11949762)
chr8 (231-363)||(2105864-2105994)
chr8 (227-318)||(12670497-12670588)
chr8 (225-303)||(939435-939513)
chr8 (266-397)||(11949087-11949223)
chr8 (360-399)||(12670440-12670479)
chr8 (349-398)||(12479337-12479386)
[»] chr5 (4 HSPs)
chr5 (231-392)||(38327773-38327932)
chr5 (229-305)||(31965397-31965473)
chr5 (230-303)||(8219733-8219806)
chr5 (231-303)||(38322601-38322673)
[»] chr3 (10 HSPs)
chr3 (225-396)||(3701664-3701834)
chr3 (227-398)||(3705416-3705586)
chr3 (225-398)||(3712964-3713136)
chr3 (225-304)||(3707923-3708002)
chr3 (225-304)||(3719483-3719562)
chr3 (230-304)||(32775269-32775343)
chr3 (230-304)||(32814955-32815029)
chr3 (231-304)||(26807449-26807522)
chr3 (229-304)||(32772689-32772764)
chr3 (240-293)||(41845773-41845826)
[»] chr1 (5 HSPs)
chr1 (226-303)||(27981044-27981121)
chr1 (231-304)||(43849047-43849120)
chr1 (232-304)||(30953117-30953189)
chr1 (240-293)||(39755137-39755190)
chr1 (240-293)||(39760491-39760544)
[»] chr7 (4 HSPs)
chr7 (230-304)||(25796171-25796245)
chr7 (13-74)||(5586501-5586563)
chr7 (13-74)||(5591462-5591524)
chr7 (240-293)||(45343081-45343134)
[»] chr4 (4 HSPs)
chr4 (229-303)||(26741372-26741446)
chr4 (231-304)||(19185991-19186064)
chr4 (232-303)||(30161835-30161906)
chr4 (232-303)||(51386264-51386335)
[»] chr6 (1 HSPs)
chr6 (231-303)||(21882907-21882979)
[»] chr2 (4 HSPs)
chr2 (231-303)||(4767493-4767565)
chr2 (231-303)||(38551328-38551400)
chr2 (240-293)||(14428572-14428625)
chr2 (240-293)||(34962092-34962145)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 136 - 399
Target Start/End: Complemental strand, 11949597 - 11949335
Alignment:
Q  136 aagaattgggaatacttatgtttggctttaccttaactttttgtcggcaacgtgtttaatgataaatatataacaacatcctcaaccacacaacaaagca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  11949597 aagaattgggaatacttatgtttggctttaccttaactttttgtcgacaacgtgtttaatgttaaatatataacaacatcctcaaccacacagcaaagca 11949498  T
Q  236 ccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatgataatgtttgt 335  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||    
T  11949497 ccagtggtctagtggtagaatagtaccctgccacgctacagacccgggttcaattcctggctggtgcaacccttgaatgagctatgatgataatgtttgt 11949398  T
Q  336 ggtgttgggtaacatcacctattctgaaaaactggatgataaatatacctctgagctccttctg 399  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  11949397 ggtgttgggtaacatc-cctatcctgaaaaacttgatgataaatatacctctgagctccttctg 11949335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 232 - 398
Target Start/End: Original strand, 12289395 - 12289561
Alignment:
Q  232 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatgataatgt 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | || | |||| |||||||||||||    
T  12289395 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattcgtgaaggagcaatgatgataatgt 12289494  T
Q  332 ttgtggtgttgggtaacatcacctattctgaaaaactggatgataaatatacctctgagctccttct 398  Q
    |||||||||||||||||||||||||| || ||| | ||||||| | ||| ||| |||||||||||||    
T  12289495 ttgtggtgttgggtaacatcacctatcctcaaataatggatgacatatacacccctgagctccttct 12289561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 12482857 - 12482729
Alignment:
Q  225 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatg 324  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  12482857 acaacaaagcaccagtggtctagtggtagaatagtaccctgccatggtacagacccgggttcaattcctggctggtgcaacccctgaatgagctatgatg 12482758  T
Q  325 ataatgtttgtggtgttgggtaacatcac 353  Q
    ||||||  |||||||||||||||||||||    
T  12482757 ataatgcatgtggtgttgggtaacatcac 12482729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 226 - 398
Target Start/End: Complemental strand, 12483176 - 12483004
Alignment:
Q  226 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatga 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |   ||||||||||||    
T  12483176 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacttcagatggagctatgatga 12483077  T
Q  326 taatgtttgtggtgttgggtaacatcacctattctgaaaaactggatgataaatatacctctgagctccttct 398  Q
    | |  | |||| |||| ||||||||||| ||| |||||| ||||||||| | ||||||| |||||||||||||    
T  12483076 tgacatctgtgatgttaggtaacatcacttatcctgaaatactggatgacatatatacccctgagctccttct 12483004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 11949762 - 11949636
Alignment:
Q  13 taggttatggaaggtattgctaagtataatcttctactttgaaaatgactcatactgaggctaagttccttaaccttcaaccaatgttcttggtgtatga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         |||||||    
T  11949762 taggttatggaaggtattgctaagtataatcttctactttgaaaatgacccatactgaggctaagttccttaaccttcaaccaa---------tgtatga 11949672  T
Q  113 gacacatttctagtctcatggttaagaattgggaat 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  11949671 gacacatttctagtctcatggttaagaattgggaat 11949636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 231 - 363
Target Start/End: Original strand, 2105864 - 2105994
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatgataatg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| | |||||||||| |||     
T  2105864 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca-cctgtggagg-gctatgatgaaaata 2105961  T
Q  331 tttgtggtgttgggtaacatcacctattctgaa 363  Q
    |||||| |||| ||||||||||||||| |||||    
T  2105962 tttgtgatgttcggtaacatcacctatcctgaa 2105994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 12670588 - 12670497
Alignment:
Q  227 aacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  12670588 aacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaaccactgaatgagct 12670497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 939513 - 939435
Alignment:
Q  225 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939513 acaataaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 939435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 266 - 397
Target Start/End: Complemental strand, 11949223 - 11949087
Alignment:
Q  266 ccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatg-----ataatgtttgtggtgttgggtaacatcacctattct 360  Q
    ||||||| ||||||||||||| |||||||||||||||||    || | | |||||||||     |||||| |||||||||||||||||||||||||| ||    
T  11949223 ccacggttcagacccgggttcaattcccggctggtgcaatatttgaaggtgctatgatgtgatgataatgattgtggtgttgggtaacatcacctatcct 11949124  T
Q  361 gaaaaactggatgataaatatacctctgagctccttc 397  Q
    || | |||||||||  |||||| ||||||| ||||||    
T  11949123 gagatactggatgaccaatatatctctgagttccttc 11949087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 12670479 - 12670440
Alignment:
Q  360 tgaaaaactggatgataaatatacctctgagctccttctg 399  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12670479 tgaaaaactggatgataaatatacctctgagctccttctg 12670440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 12479386 - 12479337
Alignment:
Q  349 atcacctattctgaaaaactggatgataaatatacctctgagctccttct 398  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  12479386 atcacctatcttgaaaaactggatgataaatatacctctgagcttcttct 12479337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 231 - 392
Target Start/End: Original strand, 38327773 - 38327932
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatgataatg 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |    ||||| |||||| |||     
T  38327773 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcatttctt---agagctgtgatgaaaata 38327869  T
Q  331 tttgtggtgttgggtaacatcacctattctgaaaaactggatg-ataaatatacctctgagct 392  Q
    |||||||||||||||||||||||||   |||||| |||||||| | |||||||||||||||||    
T  38327870 tttgtggtgttgggtaacatcaccttccctgaaacactggatgaaaaaatatacctctgagct 38327932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 31965473 - 31965397
Alignment:
Q  229 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965473 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaac 31965397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 8219733 - 8219806
Alignment:
Q  230 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219733 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 8219806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 38322601 - 38322673
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322601 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 38322673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 225 - 396
Target Start/End: Original strand, 3701664 - 3701834
Alignment:
Q  225 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatg 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||   |||||||||||    
T  3701664 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa-atttgagggagctatgatg 3701762  T
Q  325 ataatgtttgtggtgttgggtaacatcacctattctgaaaaactggatgataaatatacctctgagctcctt 396  Q
    ||||| | ||||||||| ||||||||||| | | |||||| | |||||||  |  ||||| |||||||||||    
T  3701763 ataatatctgtggtgttcggtaacatcacttctcctgaaacattggatgaataccatacccctgagctcctt 3701834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 227 - 398
Target Start/End: Original strand, 3705416 - 3705586
Alignment:
Q  227 aacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacccctggatgagctatgatgat 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||   |||||||||||||    
T  3705416 aacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa-ttttgagggagctatgatgat 3705514  T
Q  327 aatgtttgtggtgttgggtaacatcacctattctgaaaaactggatgataaatatacctctgagctccttct 398  Q
    ||| | |||| |||| ||||||||||| | | |||||| | ||||||| ||  |||||||||||||| ||||    
T  3705515 aatatatgtgttgttcggtaacatcacttctcctgaaacattggatgaaaataatacctctgagctctttct 3705586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 225 - 398
Target Start/End: Original strand, 3712964 - 3713136
Alignment:
Q  225 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca-acccctggatgagctatgat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |  ||  ||||||||||    
T  3712964 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcatattcgagg--gagctatgat 3713061  T
Q  324 gataatgtttgtggtgttgggtaacatcacctattctgaaaaactggatgataaatatacctctgagctccttct 398  Q
    |||||| | ||||||||| ||||||||||| | | |||||| | ||||||| ||  || ||||||||||| ||||    
T  3713062 gataatatctgtggtgttcggtaacatcacttctcctgaaacattggatgaaaataatgcctctgagctctttct 3713136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 3707923 - 3708002
Alignment:
Q  225 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3707923 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 3708002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 3719483 - 3719562
Alignment:
Q  225 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3719483 acaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 3719562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 32775269 - 32775343
Alignment:
Q  230 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775269 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 32775343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 32814955 - 32815029
Alignment:
Q  230 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32814955 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 32815029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 26807522 - 26807449
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807522 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 26807449  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 32772689 - 32772764
Alignment:
Q  229 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||  ||||| |||||| ||||| |||||    
T  32772689 caaagcacaagtggtttaatggtagaatagtaccctgccacggtacagacttgggtttgattcctggctgctgcaa 32772764  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 41845826 - 41845773
Alignment:
Q  240 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 293  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  41845826 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 41845773  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 27981044 - 27981121
Alignment:
Q  226 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27981044 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 27981121  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 43849120 - 43849047
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849120 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 43849047  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 30953189 - 30953117
Alignment:
Q  232 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953189 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 30953117  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 39755137 - 39755190
Alignment:
Q  240 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 293  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  39755137 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 39755190  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 39760491 - 39760544
Alignment:
Q  240 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 293  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  39760491 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 39760544  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 25796171 - 25796245
Alignment:
Q  230 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796171 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 25796245  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 5586501 - 5586563
Alignment:
Q  13 taggttatggaaggtattgctaagtataat-cttctactttgaaaatgactcatactgaggct 74  Q
    |||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||    
T  5586501 taggttatggaaggtattgctaagtataatccttctattttgaaaacgactcatattgaggct 5586563  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 5591462 - 5591524
Alignment:
Q  13 taggttatggaaggtattgctaagtataat-cttctactttgaaaatgactcatactgaggct 74  Q
    |||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||    
T  5591462 taggttatggaaggtattgctaagtataatccttctattttgaaaacgactcatattgaggct 5591524  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 45343134 - 45343081
Alignment:
Q  240 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 293  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  45343134 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 45343081  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 26741446 - 26741372
Alignment:
Q  229 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741446 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 26741372  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 19185991 - 19186064
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19185991 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 19186064  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 30161835 - 30161906
Alignment:
Q  232 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161835 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 30161906  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 51386335 - 51386264
Alignment:
Q  232 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386335 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 51386264  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 21882907 - 21882979
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882907 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 21882979  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 4767565 - 4767493
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767565 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 4767493  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 38551328 - 38551400
Alignment:
Q  231 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551328 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 38551400  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 14428572 - 14428625
Alignment:
Q  240 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 293  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  14428572 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 14428625  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 34962092 - 34962145
Alignment:
Q  240 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 293  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  34962092 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 34962145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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