View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20093_high_3 (Length: 368)
Name: NF20093_high_3
Description: NF20093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20093_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 64 - 277
Target Start/End: Original strand, 10052986 - 10053199
Alignment:
| Q |
64 |
tttgagttttatttctattttatgtaggatcataaatgttggacttcacgatatacaactttcctcgagaaaccaacatcatttttgctatttatttcga |
163 |
Q |
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| T |
10052986 |
tttgagttttatttctattttatgtaggatcataaatgttggacttcacgatatgcaactttcctcgagaaaccaacatcatttttgctatttatttcga |
10053085 |
T |
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| Q |
164 |
ttatgacttttgcattgtgttttccctttctcaaatggtttagataaaattctcattcatcatattaatataattgtctaaaccaaatgcatgtttaaat |
263 |
Q |
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| T |
10053086 |
ttatgatttttgcattgtgttttcactttctcaaatggtttagataaaattctcattcatcatattaatataattgtctaaatcaaatgcatgtttaaat |
10053185 |
T |
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| Q |
264 |
tttggaaaattcta |
277 |
Q |
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| T |
10053186 |
tttggaaaattcta |
10053199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 10052889 - 10052959
Alignment:
| Q |
3 |
aacagaaccttacatatttgatttgtgggatgaaggatattactgctatttgtaaattcattttgagtttt |
73 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
10052889 |
aacagagccttacatatttgacttgtgggatgaaggatattactgctacttgtaaattcattttgggtttt |
10052959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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