View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_12 (Length: 531)
Name: NF20094_high_12
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 7549402 - 7548906
Alignment:
| Q |
1 |
aaaatggtctttatcctaagaacaagtagactctccaacaaatggcgtgaagacgttataaaccaattgaaatatcatcactatactaatgattggagtt |
100 |
Q |
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| T |
7549402 |
aaaatggtctttatcctaagaacaagtagactctccaacaaatggcgtgaagacgttataaaccaattgaaatatcatcactatactaatgattggagtt |
7549303 |
T |
|
| Q |
101 |
ctatggtagacatttcattggtataaaataaattatatcgtatgatagttttcttcaagagaggtctttagttgtaatggaagttcagagggatcataga |
200 |
Q |
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| T |
7549302 |
ctatgctaaacatttcattggtataaa-taaattatatcatatggtagttttcttcaagagtggtctttagtagtaatggaagttcagagggatcataga |
7549204 |
T |
|
| Q |
201 |
aagatccaactagctttccttgagaactatcaatagaagaacttgcaacataaattgcaaaatggtggtgaggtgaatgttagacaagcacatcctcaat |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7549203 |
aagatccaactagctttccttgagaactattaatagaagaacttgcaacataaattgcaaaatggtggtgaggtgaatgttagacaagcacatcctcaat |
7549104 |
T |
|
| Q |
301 |
tccatgataatctaattaatcatattcatggtcttcttgacacccaagcccaaaacatggccaatgcctagaacctgactaatacccttaatacccatga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
7549103 |
tccatgataatctaattaatcatattcatggtcttcttgacacccaagcccaaaacatgg------------------ctaatgcccttaatacccatga |
7549022 |
T |
|
| Q |
401 |
tcgaaataggtgactaatgtttttctaatgccgtttagaaccatgtttataacctcacagatgcccaatatcaatctctaacccaattgataacttaatt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7549021 |
ctgaaataggtgactaatgtttttctaatgccgtttagaaccatgcttataacctcacagatgcccaatatcaatctctaacccgattgataacttaatt |
7548922 |
T |
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