View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_high_13 (Length: 527)

Name: NF20094_high_13
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_high_13
NF20094_high_13
[»] chr4 (19 HSPs)
chr4 (18-323)||(9894784-9895091)
chr4 (217-460)||(11247666-11247909)
chr4 (21-219)||(11247952-11248150)
chr4 (220-460)||(11108659-11108899)
chr4 (110-190)||(11108580-11108660)
chr4 (471-518)||(12701042-12701089)
chr4 (471-521)||(21555384-21555434)
chr4 (471-520)||(53584602-53584651)
chr4 (471-519)||(56100175-56100223)
chr4 (351-407)||(9894723-9894781)
chr4 (466-521)||(35929706-35929761)
chr4 (418-467)||(9894577-9894626)
chr4 (471-520)||(19598371-19598420)
chr4 (466-521)||(36609448-36609504)
chr4 (478-521)||(827840-827883)
chr4 (471-521)||(41842792-41842842)
chr4 (471-520)||(35749389-35749438)
chr4 (466-518)||(44243734-44243786)
chr4 (466-521)||(23249469-23249524)
[»] scaffold0306 (1 HSPs)
scaffold0306 (466-521)||(13091-13146)
[»] scaffold0152 (1 HSPs)
scaffold0152 (466-521)||(22181-22236)
[»] chr8 (18 HSPs)
chr8 (466-521)||(22798540-22798595)
chr8 (471-521)||(23403602-23403652)
chr8 (471-521)||(30204683-30204733)
chr8 (466-521)||(16655977-16656032)
chr8 (471-521)||(3001412-3001462)
chr8 (471-521)||(4623885-4623935)
chr8 (474-519)||(4234185-4234230)
chr8 (471-516)||(23275567-23275612)
chr8 (247-354)||(13308728-13308835)
chr8 (471-521)||(14842312-14842362)
chr8 (471-521)||(39436845-39436895)
chr8 (471-508)||(4414230-4414267)
chr8 (471-518)||(21567711-21567758)
chr8 (471-521)||(36470170-36470221)
chr8 (471-510)||(45310061-45310100)
chr8 (474-516)||(29958554-29958596)
chr8 (466-519)||(37630001-37630054)
chr8 (471-521)||(36046564-36046613)
[»] chr5 (16 HSPs)
chr5 (466-521)||(3729368-3729423)
chr5 (471-521)||(39508351-39508401)
chr5 (471-520)||(21583853-21583902)
chr5 (471-519)||(21020687-21020735)
chr5 (466-521)||(34766919-34766974)
chr5 (471-521)||(8159105-8159155)
chr5 (471-521)||(2068967-2069015)
chr5 (466-521)||(25081766-25081821)
chr5 (466-521)||(25139735-25139790)
chr5 (466-508)||(9793780-9793822)
chr5 (471-508)||(9793683-9793720)
chr5 (466-510)||(41929340-41929384)
chr5 (471-510)||(9913806-9913845)
chr5 (474-521)||(20815677-20815724)
chr5 (471-505)||(3711186-3711220)
chr5 (471-511)||(20736203-20736243)
[»] chr3 (12 HSPs)
chr3 (474-521)||(35534489-35534536)
chr3 (471-521)||(36404257-36404307)
chr3 (471-521)||(39391961-39392011)
chr3 (471-521)||(45602988-45603038)
chr3 (466-519)||(37115924-37115977)
chr3 (466-521)||(46487269-46487323)
chr3 (466-505)||(14201716-14201755)
chr3 (466-521)||(29360481-29360536)
chr3 (479-521)||(16353524-16353566)
chr3 (466-508)||(52742351-52742393)
chr3 (481-521)||(3618375-3618415)
chr3 (471-518)||(48944143-48944190)
[»] chr2 (19 HSPs)
chr2 (466-521)||(21423364-21423419)
chr2 (466-519)||(5958965-5959018)
chr2 (466-519)||(37140171-37140224)
chr2 (466-521)||(24475967-24476022)
chr2 (466-521)||(37060114-37060169)
chr2 (471-521)||(15070425-15070475)
chr2 (471-521)||(30609721-30609771)
chr2 (471-516)||(30393632-30393677)
chr2 (471-520)||(37802872-37802921)
chr2 (473-521)||(4382213-4382261)
chr2 (466-521)||(6974552-6974607)
chr2 (466-521)||(13274200-13274255)
chr2 (471-521)||(27004453-27004503)
chr2 (476-521)||(27404650-27404695)
chr2 (471-510)||(10217401-10217440)
chr2 (466-521)||(28107523-28107578)
chr2 (471-511)||(22194328-22194368)
chr2 (473-521)||(43022916-43022964)
chr2 (471-508)||(5807368-5807404)
[»] chr1 (14 HSPs)
chr1 (466-521)||(41998914-41998969)
chr1 (471-521)||(794917-794967)
chr1 (471-521)||(18808782-18808832)
chr1 (466-516)||(39001946-39001996)
chr1 (466-518)||(1585859-1585911)
chr1 (466-521)||(26653975-26654030)
chr1 (465-511)||(3695404-3695450)
chr1 (466-508)||(6750358-6750400)
chr1 (475-517)||(11121865-11121907)
chr1 (471-520)||(571651-571700)
chr1 (474-521)||(4792603-4792650)
chr1 (471-517)||(9224863-9224909)
chr1 (471-510)||(44272403-44272443)
chr1 (466-521)||(24909543-24909598)
[»] chr6 (8 HSPs)
chr6 (471-521)||(2814925-2814975)
chr6 (474-521)||(444528-444575)
chr6 (471-521)||(1067804-1067854)
chr6 (471-520)||(24640388-24640437)
chr6 (471-519)||(26394026-26394074)
chr6 (466-521)||(6200197-6200252)
chr6 (466-509)||(12324171-12324214)
chr6 (471-520)||(23774073-23774122)
[»] scaffold0532 (1 HSPs)
scaffold0532 (471-520)||(11323-11372)
[»] scaffold1248 (1 HSPs)
scaffold1248 (471-519)||(972-1020)
[»] scaffold0952 (1 HSPs)
scaffold0952 (471-519)||(1293-1341)
[»] scaffold0302 (1 HSPs)
scaffold0302 (466-521)||(18538-18593)
[»] chr7 (5 HSPs)
chr7 (471-521)||(8163678-8163728)
chr7 (471-521)||(40337101-40337151)
chr7 (471-521)||(41326045-41326095)
chr7 (471-521)||(2362417-2362467)
chr7 (471-516)||(35589447-35589492)
[»] scaffold0121 (1 HSPs)
scaffold0121 (471-519)||(37440-37488)
[»] scaffold0025 (1 HSPs)
scaffold0025 (466-518)||(67871-67923)
[»] scaffold0140 (1 HSPs)
scaffold0140 (466-521)||(21475-21530)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 9895091 - 9894784
Alignment:
Q  18 acttatatgatacaaagggttctgaaggccaaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctaatgtttcaatgtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9895091 acttatatgatacaaagggttctgaaggccaaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctcatgtttcaatgtc 9894992  T
Q  118 tttgtgaaggcaaattagtgcagaataatatctccttggttgattcaaaacatctttgttggttgattgaccaaaaattgaaggacgttaggagaaggtt 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9894991 tttgtgaaggcaaattaatgcagaataatatctccttggttgattcaaaacatctttgttggttgattgaccaaaaatggaaggacgttagtagaaggtt 9894892  T
Q  218 ggcaccaccattgacatctagggatgaa--aaaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaagtcaaa 315  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9894891 ggcaccaccattgacatctagggatgaaaaaaaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaagtcaaa 9894792  T
Q  316 ctttcatg 323  Q
     |||||||    
T  9894791 ttttcatg 9894784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 217 - 460
Target Start/End: Complemental strand, 11247909 - 11247666
Alignment:
Q  217 tggcaccaccattgacatctagggatgaaaaaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaagtcaaac 316  Q
    ||||||||||||||||||| ||| | ||| ||||||||| ||||||||||||| ||| |||||||||| |||| |||||||| ||||| |||||||||      
T  11247909 tggcaccaccattgacatccaggaacgaagaaatggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcattgaaagtcaact 11247810  T
Q  317 tttcatgggattgatgatgaatgataaaggagatgagacagtaccctttggcgaggtcgatcctagatttttgcccaatctgctgctttgaatgaattca 416  Q
    ||| ||||| ||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |  ||| ||||||||| |||    
T  11247809 tttgatgggcttgatgatgaatggtaatggagatgagacagttccatttggcgaggtcgatcctagatttttgcccaatataatgccttgaatgaaatca 11247710  T
Q  417 tgtatttgttttatgtaccctttgagatggatctatcacaattt 460  Q
     |||||||||||    |||||||||| ||||||||||| |||||    
T  11247709 ggtatttgttttgcaaaccctttgaggtggatctatcataattt 11247666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 11248150 - 11247952
Alignment:
Q  21 tatatgatacaaagggttctgaaggccaaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctaatgtttcaatgtcttt 120  Q
    ||||||| | |||||||||| ||||||||||||||||||||||  ||||||||||| ||| | |||||||||||||  ||||| |||||||||| |||||    
T  11248150 tatatgaaagaaagggttctaaaggccaaagagaaactgaagatgcaaaggcatgacaacaaagagaaagagatggcaatgctgatgtttcaatatcttt 11248051  T
Q  121 gtgaaggcaaattagtgcagaataatatctccttggttgattcaaaacatctttgttggttgattgaccaaaaattgaaggacgttaggagaaggttgg 219  Q
     |||||| || ||  |||||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  11248050 atgaaggtaactttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttgattgaccagaaattgaaggaggttggtagaaggttgg 11247952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 220 - 460
Target Start/End: Original strand, 11108659 - 11108899
Alignment:
Q  220 caccaccattgacatctagggatgaaaaaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaagtcaaacttt 319  Q
    |||||||||| ||||| ||  ||||| |||||||||||||||||| |||| ||| ||| ||  ||||||| ||||  |||  ||| |||| |||| ||||    
T  11108659 caccaccatttacatccagtaatgaagaaatggcaatgatgggtcctggccatgctggaatacctatgaataatgacgacgacattgaaattcaatcttt 11108758  T
Q  320 catgggattgatgatgaatgataaaggagatgagacagtaccctttggcgaggtcgatcctagatttttgcccaatctgctgctttgaatgaattcatgt 419  Q
    |||||| ||||||||||||  ||| ||||||||| |||| || |||||||| |||||||||||  ||||||| ||||| || | || |||||||||||||    
T  11108759 catgggcttgatgatgaatagtaatggagatgagtcagtgccatttggcgaagtcgatcctagggttttgccaaatctactaccttaaatgaattcatgt 11108858  T
Q  420 atttgttttatgtaccctttgagatggatctatcacaattt 460  Q
    |||||||||   | ||||||| ||||||||||||| |||||    
T  11108859 atttgttttgcttgccctttgtgatggatctatcataattt 11108899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 11108580 - 11108660
Alignment:
Q  110 tcaatgtctttgtgaaggcaaattagtgcagaataatatctccttggttgattcaaaacatctttgttggttgattgacca 190  Q
    ||||||||||| |||| |||||||  ||||||||||||| || |||||||||||||||||||||| |||||||| ||||||    
T  11108580 tcaatgtctttttgaaagcaaatttatgcagaataatatgtcattggttgattcaaaacatcttttttggttgactgacca 11108660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 12701042 - 12701089
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12701042 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 12701089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 21555384 - 21555434
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21555384 ttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcac 21555434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 53584651 - 53584602
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53584651 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctca 53584602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 56100223 - 56100175
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  56100223 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctc 56100175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 9894781 - 9894723
Alignment:
Q  351 gagacagtaccctttggcgaggtcgatcctagat--ttttgcccaatctgctgctttga 407  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||    
T  9894781 gagacagtaccctttggcgaggtcgatcctagatttttttgcccaatctgctactttga 9894723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 35929706 - 35929761
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  35929706 cctgtttgaaatagtttttgttttcagtttttgaaatatataagtcctcttctcac 35929761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 9894626 - 9894577
Alignment:
Q  418 gtatttgttttatgtaccctttgagatggatctatcacaattttgtatcc 467  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  9894626 gtatttgttttgtgtgccctttgagatggatctatcacaattttgtatcc 9894577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 19598371 - 19598420
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    |||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  19598371 ttgaaatagtttttgttttcagttttcgaaatatacaagtcattttctca 19598420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 36609504 - 36609448
Alignment:
Q  466 cctggttgaaatagtttttgtttt-cagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| || |||||||||    
T  36609504 cctgtttgaaatagtttttgtttttcagtttttgaaatatacaaatcctcttctcac 36609448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 521
Target Start/End: Original strand, 827840 - 827883
Alignment:
Q  478 agtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  827840 agtttttgttttcggtttttgaaatatacaagtcctcttctcac 827883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 41842792 - 41842842
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||||||| ||||||||||||||||| || | |||||||    
T  41842792 ttgaaatagtttttgttttcggtttttgaaatatacaaatccttttctcac 41842842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 35749389 - 35749438
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    |||||||| ||||| |||||| ||||||||||||||||||| ||||||||    
T  35749389 ttgaaataatttttattttcaatttttgaaatatacaagtcatcttctca 35749438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 518
Target Start/End: Complemental strand, 44243786 - 44243734
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 518  Q
    |||| ||||||||  ||||||||| ||||||||||||||||||||| ||||||    
T  44243786 cctgtttgaaataaattttgtttttagtttttgaaatatacaagtcatcttct 44243734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 23249469 - 23249524
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||| | ||||||||||| |||||||||||||||||| | |||||||||    
T  23249469 cctgtttgaaacaatttttgttttcggtttttgaaatatacaagccctcttctcac 23249524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 13146 - 13091
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13146 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 13091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 22181 - 22236
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22181 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 22236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 22798540 - 22798595
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22798540 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 22798595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 23403602 - 23403652
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23403602 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 23403652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 30204733 - 30204683
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30204733 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcac 30204683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 16655977 - 16656032
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  16655977 cctgtttgaaatagtttttgttttcagtttttaaaatatacaagccttcttctcac 16656032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 3001462 - 3001412
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  3001462 ttgaaatagtttttattttcagtttttgaaatatacaagtcctcttctcac 3001412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 4623935 - 4623885
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  4623935 ttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcac 4623885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 519
Target Start/End: Original strand, 4234185 - 4234230
Alignment:
Q  474 aaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  4234185 aaatagtttttgttttcagtttttgaaatatacaagtcatcttctc 4234230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 23275612 - 23275567
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  23275612 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctctt 23275567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 13308728 - 13308835
Alignment:
Q  247 aaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaagtcaaactttcatgggattgatgatgaatgataaagg 346  Q
    |||||||||||||||| |||| | || ||||||| ||||||| |||||||||||||||| |||| |||   || |||   |||||||||||||||||  |    
T  13308728 aaatggcaatgatgggccatgaccattttgggataactatgagcaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgataatag 13308827  T
Q  347 agatgaga 354  Q
    ||||||||    
T  13308828 agatgaga 13308835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 14842312 - 14842362
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  14842312 ttgaaataatttttgttttcagtttttgaaatatacaagtcctcttttcac 14842362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 39436845 - 39436895
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  39436845 ttgaaataatttttgttttcaatttttgaaatatacaagtcctcttctcac 39436895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 4414230 - 4414267
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaa 508  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4414230 ttgaaatagtttttgttttcagtttttgaaatatacaa 4414267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 21567711 - 21567758
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 518  Q
    |||||||||||||||||||||||||| ||||||||||| || ||||||    
T  21567711 ttgaaatagtttttgttttcagttttagaaatatacaaatcctcttct 21567758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 36470221 - 36470170
Alignment:
Q  471 ttgaaatagtttttgtttt-cagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  36470221 ttgaaataatttttgtttttcagtttttgaaatatacaagtcatcttctcac 36470170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 510
Target Start/End: Complemental strand, 45310100 - 45310061
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagt 510  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  45310100 ttgaaatagtttttgttttcaatttttgaaatatacaagt 45310061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 516
Target Start/End: Complemental strand, 29958596 - 29958554
Alignment:
Q  474 aaatagtttttgttttcagtttttgaaatatacaagtcttctt 516  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  29958596 aaataatttttgttttcagtttttgaaatatacaagtcatctt 29958554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 519
Target Start/End: Original strand, 37630001 - 37630054
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||| | |||||||    
T  37630001 cctgtttgaaatagtttttgttttcagttttttaaatatataagccctcttctc 37630054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 36046613 - 36046564
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  36046613 ttgaaatagtttttgttt-cagtttttgaaatatacaaatctccttttcac 36046564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 3729423 - 3729368
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3729423 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 3729368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 39508401 - 39508351
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39508401 ttgaaatagtttttgttttcagtttttgaaatatacaagtctttttctcac 39508351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 21583853 - 21583902
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21583853 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctca 21583902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 21020687 - 21020735
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21020687 ttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctc 21020735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 34766974 - 34766919
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  34766974 cctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcac 34766919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 8159155 - 8159105
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  8159155 ttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcac 8159105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 2068967 - 2069015
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  2068967 ttgaaatagtttttgttttcagtttttgaaatat--aagtcttcttctcac 2069015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 25081766 - 25081821
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||||||||||||||||||| |||||||||||||||| | |||||||||    
T  25081766 cctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcac 25081821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 25139735 - 25139790
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||||||||||||||||||| |||||||||||||||| | |||||||||    
T  25139735 cctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcac 25139790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 466 - 508
Target Start/End: Complemental strand, 9793822 - 9793780
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaa 508  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  9793822 cctgtttgaaatagtttttgttttcagtttttgaaatatacaa 9793780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 9793720 - 9793683
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaa 508  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9793720 ttgaaatagtttttgttttcagtttttgaaatatacaa 9793683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 510
Target Start/End: Original strand, 41929340 - 41929384
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagt 510  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  41929340 cctgtttgaaatagtttttgttttcagtttttgaaatatgcaagt 41929384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 9913806 - 9913845
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagt 510  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  9913806 ttgaaatagtttttgtttttagtttttgaaatatacaagt 9913845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 521
Target Start/End: Original strand, 20815677 - 20815724
Alignment:
Q  474 aaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||    
T  20815677 aaatagtttttgttttcagtttttaaaatatacaagtccttttctcac 20815724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 505
Target Start/End: Original strand, 3711186 - 3711220
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatata 505  Q
    |||||||||||||||||||||||||||||||||||    
T  3711186 ttgaaatagtttttgttttcagtttttgaaatata 3711220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 471 - 511
Target Start/End: Complemental strand, 20736243 - 20736203
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtc 511  Q
    ||||||||||||||||||||| ||||||||| ||| |||||    
T  20736243 ttgaaatagtttttgttttcaatttttgaaaaatataagtc 20736203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 474 - 521
Target Start/End: Original strand, 35534489 - 35534536
Alignment:
Q  474 aaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35534489 aaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 35534536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 36404307 - 36404257
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36404307 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 36404257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 39391961 - 39392011
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  39391961 ttgaaatagtttttgttttcagtttttgaaatatacaagttttcttttcac 39392011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 45602988 - 45603038
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  45602988 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttatcac 45603038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 37115977 - 37115924
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  37115977 cctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctc 37115924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 46487269 - 46487323
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  46487269 cctgtttgaaatagttttt-ttttcagtttttgaaatatataagtcttcttctcac 46487323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 505
Target Start/End: Original strand, 14201716 - 14201755
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatata 505  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  14201716 cctgtttgaaatagtttttgttttcagtttttgaaatata 14201755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 29360481 - 29360536
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||| | ||||| |||||||||||||||||||||||||| |||||||||    
T  29360481 cctgtttgaaacaatttttcttttcagtttttgaaatatacaagtcctcttctcac 29360536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 521
Target Start/End: Complemental strand, 16353566 - 16353524
Alignment:
Q  479 gtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  16353566 gtttttgttttcagtttttgaaatatacaagtcctcttttcac 16353524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 508
Target Start/End: Original strand, 52742351 - 52742393
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaa 508  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  52742351 cctgtttgaaatagtttttgtttccagtttttgaaatatacaa 52742393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 3618415 - 3618375
Alignment:
Q  481 ttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  3618415 ttttgttttcagtttctgaaatatacaagttttcttctcac 3618375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Complemental strand, 48944190 - 48944143
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 518  Q
    |||||||||||||| |||| || |||||||||||||||||| ||||||    
T  48944190 ttgaaatagtttttctttttagcttttgaaatatacaagtcctcttct 48944143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 21423364 - 21423419
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21423364 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcatctcac 21423419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 466 - 519
Target Start/End: Original strand, 5958965 - 5959018
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5958965 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctc 5959018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 37140224 - 37140171
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37140224 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctc 37140171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 24476022 - 24475967
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  24476022 cctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcttcttatcac 24475967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 37060169 - 37060114
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  37060169 cctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcac 37060114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 15070475 - 15070425
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  15070475 ttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcac 15070425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 30609771 - 30609721
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  30609771 ttgaaatcgtttttgttttcagttattgaaatatacaagtcttcttctcac 30609721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 30393677 - 30393632
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30393677 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctctt 30393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 37802921 - 37802872
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  37802921 ttgaaatagtttttgttttaaatttttgaaatatacaagtcttcttctca 37802872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 473 - 521
Target Start/End: Original strand, 4382213 - 4382261
Alignment:
Q  473 gaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  4382213 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcac 4382261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 6974607 - 6974552
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||    
T  6974607 cctgtttgaaatagtttttgttttcagtttttgaaatatataagtgctcttctcac 6974552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 13274200 - 13274255
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  13274200 cctgtttgaaatagtttttgtttttaatttttgaaatatacaagtcctcttctcac 13274255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 27004453 - 27004503
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  27004453 ttgaaatagtttttgttttcaatttttgaaatatataagtcctcttctcac 27004503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 521
Target Start/End: Complemental strand, 27404695 - 27404650
Alignment:
Q  476 atagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  27404695 atagtttttgtttttagtttttgaaatatacaagtcctcttctcac 27404650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 510
Target Start/End: Complemental strand, 10217440 - 10217401
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagt 510  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10217440 ttgaaatagtttttattttcagtttttgaaatatacaagt 10217401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 28107578 - 28107523
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||| | ||||||||||||||||||||||||||||| || |||||||||    
T  28107578 cctgtttgaaacaatttttgttttcagtttttgaaatatacaaatcctcttctcac 28107523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 511
Target Start/End: Complemental strand, 22194368 - 22194328
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtc 511  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  22194368 ttgaaatagtttttgtttttggtttttgaaatatacaagtc 22194328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 521
Target Start/End: Complemental strand, 43022964 - 43022916
Alignment:
Q  473 gaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||| |||||||||| ||||||| ||||||||||||| |||||||||    
T  43022964 gaaataatttttgtttttagtttttaaaatatacaagtcctcttctcac 43022916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 5807404 - 5807368
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaa 508  Q
    |||||||||||||||||| |||||||||||||||||||    
T  5807404 ttgaaatagtttttgttt-cagtttttgaaatatacaa 5807368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 41998969 - 41998914
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41998969 cctgtttgaaatagtttttgttttcattttttgaaatatacaagtcttcttctcac 41998914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 794917 - 794967
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  794917 ttgaaatattttttgttttcagtttttgaaatatacaggtcttcttctcac 794967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 18808782 - 18808832
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  18808782 ttgaaataatttttgttttcagtttatgaaatatacaagtcttcttctcac 18808832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 39001946 - 39001996
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 516  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39001946 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctctt 39001996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 1585859 - 1585911
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 518  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1585859 cctgtttgaaatagtttatgtttttagtttttgaaatatacaagtcttcttct 1585911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 26654030 - 26653975
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  26654030 cctgtttgaaatagtttttgttttcaatttttgaaatatacaggtcctcttctcac 26653975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 465 - 511
Target Start/End: Original strand, 3695404 - 3695450
Alignment:
Q  465 tcctggttgaaatagtttttgttttcagtttttgaaatatacaagtc 511  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  3695404 tcctgtttgaaatagtttttgttttcggtttttgaaatatacaagtc 3695450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 466 - 508
Target Start/End: Complemental strand, 6750400 - 6750358
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaa 508  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  6750400 cctgtttgaaatagtttttgttttcagtttttgaaatatacaa 6750358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 475 - 517
Target Start/End: Original strand, 11121865 - 11121907
Alignment:
Q  475 aatagtttttgttttcagtttttgaaatatacaagtcttcttc 517  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  11121865 aatagtttttgttttcagtttttgaaatatacaagtcatcttc 11121907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 571651 - 571700
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  571651 ttgaaatagtttttgttttcagtttttgaaatatatacgtcctcttctca 571700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 521
Target Start/End: Complemental strand, 4792650 - 4792603
Alignment:
Q  474 aaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||    
T  4792650 aaatagtttttgtttttagtttttgaaatatacaagttctcttctcac 4792603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 517
Target Start/End: Complemental strand, 9224909 - 9224863
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttc 517  Q
    ||||||||||||||||||||||||||||||||| |||| | ||||||    
T  9224909 ttgaaatagtttttgttttcagtttttgaaatacacaaattttcttc 9224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 510
Target Start/End: Complemental strand, 44272443 - 44272403
Alignment:
Q  471 ttgaaatagtttttgttttcagt-ttttgaaatatacaagt 510  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  44272443 ttgaaatagtttttgttttcagttttttgaaatatacaagt 44272403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 24909598 - 24909543
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||||||||||| |||||||||||| |||||||| |||  |||||||||    
T  24909598 cctgtttgaaatagtttttattttcagtttttaaaatatactagttctcttctcac 24909543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 2814975 - 2814925
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2814975 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 2814925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 474 - 521
Target Start/End: Original strand, 444528 - 444575
Alignment:
Q  474 aaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  444528 aaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 444575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 1067804 - 1067854
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  1067804 ttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcac 1067854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 24640437 - 24640388
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  24640437 ttgaaatagtttttgttttcagtttttgaaatatgcaagtcctcttctca 24640388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 26394074 - 26394026
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  26394074 ttgaaatagtttttgttttcagtttttgaaatataaaaatcttcttctc 26394026  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 6200252 - 6200197
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||||| ||||||||||||||||||||||||||||| |  |||||||||    
T  6200252 cctgtttgaaatattttttgttttcagtttttgaaatatacaaattctcttctcac 6200197  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 509
Target Start/End: Original strand, 12324171 - 12324214
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaag 509  Q
    |||| ||||| |||||||||||||||||||||||||||||||||    
T  12324171 cctgtttgaagtagtttttgttttcagtttttgaaatatacaag 12324214  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 23774073 - 23774122
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    |||||||||||||| |||| | ||||||||||||||||||  ||||||||    
T  23774073 ttgaaatagtttttatttttaatttttgaaatatacaagttctcttctca 23774122  T

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Target: scaffold0532 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 11323 - 11372
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 520  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11323 ttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctca 11372  T

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Target: scaffold1248 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 972 - 1020
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  972 ttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctc 1020  T

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Target: scaffold0952 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 1341 - 1293
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  1341 ttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctc 1293  T

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Target: scaffold0302 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 18593 - 18538
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  18593 cctgtttgaaatagtttttggttttagtttttgaaatatacaagtcatcttctcac 18538  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 8163728 - 8163678
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  8163728 ttgaaatagtttttgttttctgtttttgaaatatacaagttctcttctcac 8163678  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 40337151 - 40337101
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  40337151 ttgaaatagtttttgttttcagttttcgaaatatgcaagtcatcttctcac 40337101  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 41326045 - 41326095
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||||    
T  41326045 ttgaaatagtttttgttttgagtttttgaaatatataaatcttcttctcac 41326095  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 2362467 - 2362417
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||||| | |||||||||||||||||| |||||||||| ||||||||||||    
T  2362467 ttgaaacaatttttgttttcagtttttaaaatatacaaatcttcttctcac 2362417  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 35589492 - 35589447
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 516  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  35589492 ttgaaatagtttttgttttcgatttttgaaatatacaagtcctctt 35589447  T

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Target: scaffold0121 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 37488 - 37440
Alignment:
Q  471 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 519  Q
    |||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  37488 ttgaaatagtgtttgttttcggtttttgaaatatacaagtcctcttctc 37440  T

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Target: scaffold0025 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 67871 - 67923
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 518  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  67871 cctgtttgaaataatttttgttttcagtttttaaaatatacaagtcctcttct 67923  T

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Target: scaffold0140 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 21475 - 21530
Alignment:
Q  466 cctggttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 521  Q
    |||| |||||| |||||||||||||||||||||||||||| || || |||||||||    
T  21475 cctgtttgaaacagtttttgttttcagtttttgaaatatataaatcatcttctcac 21530  T

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