View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_high_2 (Length: 836)

Name: NF20094_high_2
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_high_2
NF20094_high_2
[»] chr3 (35 HSPs)
chr3 (537-821)||(37547126-37547409)
chr3 (485-539)||(26948975-26949029)
chr3 (485-537)||(4584434-4584486)
chr3 (485-537)||(6460168-6460220)
chr3 (485-537)||(36076454-36076506)
chr3 (495-538)||(3898609-3898652)
chr3 (430-520)||(13364039-13364132)
chr3 (495-538)||(21098491-21098534)
chr3 (495-538)||(34121542-34121585)
chr3 (495-538)||(40014652-40014695)
chr3 (495-538)||(49672749-49672792)
chr3 (495-537)||(1941720-1941762)
chr3 (495-537)||(12264387-12264429)
chr3 (495-537)||(38653927-38653969)
chr3 (495-537)||(43363611-43363653)
chr3 (495-537)||(49506349-49506391)
chr3 (495-528)||(37099731-37099764)
chr3 (500-537)||(54073222-54073259)
chr3 (111-143)||(12569214-12569246)
chr3 (111-143)||(13545678-13545710)
chr3 (501-537)||(20370358-20370394)
chr3 (485-537)||(20671426-20671478)
chr3 (497-529)||(53556919-53556951)
chr3 (109-144)||(54726165-54726200)
chr3 (485-528)||(55041592-55041635)
chr3 (485-535)||(31488588-31488638)
chr3 (495-537)||(49478395-49478437)
chr3 (109-143)||(54726051-54726085)
chr3 (496-525)||(5561565-5561594)
chr3 (111-144)||(28791755-28791788)
chr3 (111-144)||(28906715-28906748)
chr3 (110-143)||(32589434-32589467)
chr3 (115-144)||(39333285-39333314)
chr3 (111-144)||(42595723-42595756)
chr3 (115-144)||(48895495-48895524)
[»] chr7 (28 HSPs)
chr7 (19-98)||(2442717-2442796)
chr7 (485-540)||(13786347-13786402)
chr7 (450-505)||(79557-79615)
chr7 (485-537)||(16376545-16376597)
chr7 (485-537)||(40969068-40969120)
chr7 (495-538)||(21342010-21342053)
chr7 (495-538)||(38163338-38163381)
chr7 (485-539)||(21670158-21670212)
chr7 (495-537)||(21804572-21804614)
chr7 (495-537)||(31373643-31373685)
chr7 (495-537)||(33916947-33916989)
chr7 (495-537)||(42242154-42242196)
chr7 (495-540)||(17178234-17178279)
chr7 (496-540)||(27138525-27138569)
chr7 (485-537)||(27903417-27903469)
chr7 (495-537)||(3840641-3840683)
chr7 (111-144)||(1729392-1729425)
chr7 (495-528)||(31097899-31097932)
chr7 (111-144)||(46658844-46658877)
chr7 (111-143)||(28003174-28003206)
chr7 (111-143)||(37066294-37066326)
chr7 (498-540)||(21656818-21656860)
chr7 (485-523)||(24924256-24924294)
chr7 (485-535)||(43933546-43933596)
chr7 (111-141)||(46578377-46578407)
chr7 (111-140)||(3498293-3498322)
chr7 (115-144)||(16810929-16810958)
chr7 (111-144)||(27942437-27942470)
[»] chr6 (27 HSPs)
chr6 (19-98)||(6300950-6301029)
chr6 (19-98)||(6307760-6307839)
chr6 (402-537)||(6300709-6300847)
chr6 (402-537)||(6307519-6307657)
chr6 (181-242)||(6300868-6300929)
chr6 (181-242)||(6307678-6307739)
chr6 (485-540)||(8539730-8539785)
chr6 (485-537)||(3593070-3593122)
chr6 (423-537)||(162669-162786)
chr6 (495-538)||(28099596-28099639)
chr6 (495-538)||(33646129-33646172)
chr6 (495-537)||(2266963-2267005)
chr6 (495-537)||(12597265-12597307)
chr6 (485-539)||(15044899-15044953)
chr6 (485-538)||(13533944-13533997)
chr6 (485-537)||(1405563-1405615)
chr6 (429-528)||(8657073-8657175)
chr6 (495-535)||(19997852-19997892)
chr6 (495-540)||(14986388-14986433)
chr6 (495-539)||(2005615-2005659)
chr6 (501-537)||(2737142-2737178)
chr6 (111-143)||(14804275-14804307)
chr6 (485-537)||(17202609-17202661)
chr6 (115-145)||(22341956-22341986)
chr6 (111-144)||(10731585-10731618)
chr6 (495-528)||(24570763-24570796)
chr6 (495-528)||(33289079-33289112)
[»] chr8 (27 HSPs)
chr8 (485-540)||(23353619-23353674)
chr8 (495-537)||(18997887-18997929)
chr8 (495-539)||(15961319-15961363)
chr8 (495-538)||(6299019-6299062)
chr8 (495-537)||(995815-995857)
chr8 (495-537)||(10478124-10478166)
chr8 (495-537)||(18175568-18175610)
chr8 (495-537)||(30473884-30473926)
chr8 (495-537)||(32110861-32110903)
chr8 (485-538)||(18842081-18842134)
chr8 (485-537)||(11725367-11725419)
chr8 (485-537)||(28583032-28583084)
chr8 (485-537)||(39997868-39997920)
chr8 (429-528)||(405363-405465)
chr8 (495-537)||(19241013-19241055)
chr8 (495-537)||(19314197-19314239)
chr8 (495-537)||(44832186-44832228)
chr8 (485-538)||(35122321-35122374)
chr8 (485-538)||(44837086-44837139)
chr8 (495-535)||(18569052-18569092)
chr8 (485-537)||(24409053-24409105)
chr8 (485-528)||(11142644-11142687)
chr8 (495-528)||(17695620-17695653)
chr8 (109-146)||(19293009-19293046)
chr8 (111-144)||(32480308-32480341)
chr8 (500-541)||(40169716-40169757)
chr8 (495-528)||(44831143-44831176)
[»] chr5 (25 HSPs)
chr5 (485-539)||(20655047-20655101)
chr5 (495-540)||(40177228-40177273)
chr5 (495-539)||(20874875-20874919)
chr5 (495-539)||(34110839-34110883)
chr5 (430-538)||(8179752-8179864)
chr5 (485-540)||(33375941-33375996)
chr5 (486-528)||(1396167-1396209)
chr5 (495-537)||(2398942-2398984)
chr5 (495-537)||(10729442-10729484)
chr5 (495-537)||(16526306-16526348)
chr5 (495-537)||(34107338-34107380)
chr5 (495-537)||(38246865-38246907)
chr5 (485-528)||(25099245-25099288)
chr5 (485-528)||(25158335-25158378)
chr5 (111-146)||(38283376-38283411)
chr5 (500-538)||(17373160-17373198)
chr5 (111-147)||(20361969-20362005)
chr5 (111-143)||(35245720-35245752)
chr5 (112-143)||(22635426-22635457)
chr5 (109-143)||(9005057-9005091)
chr5 (111-144)||(19784529-19784562)
chr5 (115-144)||(20914739-20914768)
chr5 (115-144)||(21369389-21369418)
chr5 (495-528)||(30088711-30088744)
chr5 (495-528)||(30096285-30096318)
[»] chr4 (30 HSPs)
chr4 (495-540)||(12090456-12090501)
chr4 (495-540)||(33139468-33139513)
chr4 (485-537)||(16904952-16905004)
chr4 (485-537)||(37590804-37590856)
chr4 (423-537)||(18209623-18209740)
chr4 (495-538)||(30824921-30824964)
chr4 (495-538)||(37651853-37651896)
chr4 (479-538)||(48118533-48118592)
chr4 (495-537)||(31965969-31966011)
chr4 (485-535)||(46256211-46256261)
chr4 (495-537)||(52434811-52434853)
chr4 (485-537)||(47142800-47142852)
chr4 (485-528)||(44376088-44376131)
chr4 (495-537)||(16917888-16917930)
chr4 (111-144)||(48079628-48079661)
chr4 (111-143)||(51126101-51126133)
chr4 (111-143)||(51975236-51975268)
chr4 (111-143)||(52256854-52256886)
chr4 (496-527)||(11238181-11238212)
chr4 (495-538)||(18258212-18258255)
chr4 (495-526)||(53143273-53143304)
chr4 (495-537)||(35760768-35760810)
chr4 (495-537)||(39058357-39058399)
chr4 (495-537)||(41387313-41387355)
chr4 (495-528)||(19745245-19745278)
chr4 (495-528)||(19794528-19794561)
chr4 (111-140)||(23710834-23710863)
chr4 (495-528)||(23976715-23976748)
chr4 (111-144)||(49745458-49745491)
chr4 (109-146)||(54786975-54787012)
[»] chr2 (17 HSPs)
chr2 (495-540)||(41664697-41664742)
chr2 (485-537)||(8700438-8700490)
chr2 (485-537)||(19596363-19596415)
chr2 (495-538)||(44902268-44902311)
chr2 (495-537)||(6120739-6120781)
chr2 (495-537)||(18351738-18351780)
chr2 (495-537)||(20545012-20545054)
chr2 (495-537)||(27944796-27944838)
chr2 (495-540)||(41663424-41663469)
chr2 (495-540)||(42442151-42442196)
chr2 (498-540)||(25889036-25889078)
chr2 (485-535)||(31424186-31424236)
chr2 (495-529)||(31572468-31572502)
chr2 (501-537)||(17839249-17839285)
chr2 (111-143)||(26567748-26567780)
chr2 (493-540)||(2988906-2988953)
chr2 (111-144)||(40340581-40340614)
[»] chr1 (22 HSPs)
chr1 (495-540)||(4266568-4266613)
chr1 (495-539)||(29942205-29942249)
chr1 (495-539)||(38913745-38913789)
chr1 (495-538)||(1231983-1232026)
chr1 (495-538)||(2951365-2951408)
chr1 (495-537)||(9216218-9216260)
chr1 (495-537)||(18855233-18855275)
chr1 (495-537)||(31018200-31018242)
chr1 (495-537)||(34888686-34888728)
chr1 (495-537)||(52957063-52957105)
chr1 (485-538)||(18706508-18706561)
chr1 (485-537)||(23482707-23482759)
chr1 (429-528)||(29387896-29387998)
chr1 (495-535)||(50326188-50326228)
chr1 (485-537)||(52687114-52687166)
chr1 (495-537)||(2590467-2590509)
chr1 (485-538)||(38444808-38444861)
chr1 (111-143)||(25378369-25378401)
chr1 (496-528)||(28947463-28947495)
chr1 (111-143)||(49363496-49363528)
chr1 (485-528)||(35614244-35614287)
chr1 (111-144)||(46518057-46518090)
[»] scaffold0031 (1 HSPs)
scaffold0031 (495-537)||(46461-46503)
[»] scaffold0896 (1 HSPs)
scaffold0896 (429-528)||(1035-1137)
[»] scaffold0022 (1 HSPs)
scaffold0022 (495-538)||(149049-149092)
[»] scaffold0836 (1 HSPs)
scaffold0836 (495-537)||(5278-5320)
[»] scaffold0515 (1 HSPs)
scaffold0515 (495-537)||(6061-6103)
[»] scaffold0306 (1 HSPs)
scaffold0306 (495-537)||(6071-6113)
[»] scaffold0173 (1 HSPs)
scaffold0173 (485-537)||(19524-19576)
[»] scaffold0316 (1 HSPs)
scaffold0316 (495-538)||(14730-14772)
[»] scaffold0287 (1 HSPs)
scaffold0287 (111-140)||(1834-1863)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-154; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 537 - 821
Target Start/End: Complemental strand, 37547409 - 37547126
Alignment:
Q  537 tatagagtaagttctaccttcaaacctcatacttacttaggaaagacctggacctaaagaacattaggcttagtccccccactccccatcccaacttctt 636  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37547409 tatagagtaagttctaccttcaaacctcatacttacttaggaaagacctggacctaaagaacattaggcttagtccccccactccccatcccaacttctt 37547310  T
Q  637 gatgaaatatttattaaagttgtgatcccttaaccctatcaacttaggttggatgaagttgttccaatagatattatgtagtttctgcgcccatccgcac 736  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37547309 gatgaaatatttattaaagttgtgatcccttaaccctatcaacttaggttggatgaagttgttccaatagatattatgtagtttctgcgcccatccgcac 37547210  T
Q  737 aaaatcacttttcattttttctagctaactacaaacgtgcattgggagaataattgtttgcatagtgtacgtaagaagagaaacc 821  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37547209 -aaatcacttttcattttttctagctaactacaaacgtgcattgggagaataattgtttgcatagtgtacgtaagaagagaaacc 37547126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 26948975 - 26949029
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  26948975 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtat 26949029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 4584486 - 4584434
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  4584486 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 4584434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 6460220 - 6460168
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  6460220 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 6460168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 36076506 - 36076454
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  36076506 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 36076454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 3898609 - 3898652
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  3898609 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 3898652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 430 - 520
Target Start/End: Complemental strand, 13364132 - 13364039
Alignment:
Q  430 aaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttt---tgactacatatgcaatgtatatgacccgtgcggcagca 520  Q
    ||||||||||| |||| | |||| ||||||||||| |||| |||||||| |||     ||||||||| ||||||||||||||||||||||||||    
T  13364132 aaaatgatgacgttaaaattatatgttgtaattgagctattaaactttgctttgtactactacatatacaatgtatatgacccgtgcggcagca 13364039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 21098491 - 21098534
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  21098491 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 21098534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 34121542 - 34121585
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  34121542 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 34121585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 40014695 - 40014652
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  40014695 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 40014652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 49672749 - 49672792
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  49672749 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 49672792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 1941762 - 1941720
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  1941762 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 1941720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 12264387 - 12264429
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  12264387 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 12264429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 38653969 - 38653927
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  38653969 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 38653927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 43363653 - 43363611
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  43363653 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 43363611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 49506391 - 49506349
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  49506391 caatgtatatgacccgtgcggcagtacgggtggaaagtctagt 49506349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 528
Target Start/End: Original strand, 37099731 - 37099764
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||||||||||||||||||||||||||||||    
T  37099731 caatgtatatgacccgtgcggcagcacgggtgga 37099764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 54073222 - 54073259
Alignment:
Q  500 tatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  54073222 tatatgacccgtgcggcagcacgggtggaaagtctagt 54073259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 12569214 - 12569246
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  12569214 aaaatttgcttatattttaaaacggagggagta 12569246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 13545678 - 13545710
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  13545678 aaaatttgcttatattttaaaacggagggagta 13545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 501 - 537
Target Start/End: Complemental strand, 20370394 - 20370358
Alignment:
Q  501 atatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20370394 atatgacccgtgcggcagcacgggtggatggtctagt 20370358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 20671426 - 20671478
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | ||||||||||||| |||| ||||||||||||||| ||||||||    
T  20671426 actacatctacaatgtatatgactcgtgtggcagcacgggtggaaagtctagt 20671478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 529
Target Start/End: Complemental strand, 53556951 - 53556919
Alignment:
Q  497 atgtatatgacccgtgcggcagcacgggtggat 529  Q
    |||||||||||||||||||||||||||||||||    
T  53556951 atgtatatgacccgtgcggcagcacgggtggat 53556919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 54726165 - 54726200
Alignment:
Q  109 tcaaaatttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||| ||||||||||||||||    
T  54726165 tcaaaatttgcttatatttaaaaacggagggagtac 54726200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 55041635 - 55041592
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  55041635 actacatctacaatgtatatgacccgtgcggtagcacgggtgga 55041592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 31488588 - 31488638
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtcta 535  Q
    ||||||| | |||||||||| |||||||||||||||||| |||| ||||||    
T  31488588 actacatctacaatgtatataacccgtgcggcagcacggatggaaagtcta 31488638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 49478395 - 49478437
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||    
T  49478395 caatgtaaatgactcgtgcggcagcacgggtggaaagtctagt 49478437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 54726085 - 54726051
Alignment:
Q  109 tcaaaatttgcttatattttaaaacggagggagta 143  Q
    ||||||||||||||||||| |||||||||||||||    
T  54726085 tcaaaatttgcttatatttaaaaacggagggagta 54726051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 5561594 - 5561565
Alignment:
Q  496 aatgtatatgacccgtgcggcagcacgggt 525  Q
    ||||||||||||||||||||||||||||||    
T  5561594 aatgtatatgacccgtgcggcagcacgggt 5561565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 28791755 - 28791788
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||||||||||||| |||||||||||||||    
T  28791755 aaaatttgcttatattttgaaacggagggagtac 28791788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 28906748 - 28906715
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||| ||||||||||||||||    
T  28906748 aaaatttgcttatatttaaaaacggagggagtac 28906715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 32589434 - 32589467
Alignment:
Q  110 caaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||| |||||||||||||    
T  32589434 caaaatttgcttatattttagaacggagggagta 32589467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 39333314 - 39333285
Alignment:
Q  115 tttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||||||||||||||    
T  39333314 tttgcttatattttaaaacggagggagtac 39333285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 42595756 - 42595723
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||| |||||||||||||||||||||||||    
T  42595756 aaaatttgtttatattttaaaacggagggagtac 42595723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 48895524 - 48895495
Alignment:
Q  115 tttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||||||||||||||    
T  48895524 tttgcttatattttaaaacggagggagtac 48895495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 2442717 - 2442796
Alignment:
Q  19 taaatggctctgtattttatgcttctaaactccatctccaaggtgtattaatcaaagcacaagattgttgtttcctatac 98  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442717 taaatgactctgtatcttatgcttctaaactccatctccaaggtgtattaatcaaagcacaagattgttgtttcctatac 2442796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 13786347 - 13786402
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||||||||||    
T  13786347 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtata 13786402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 450 - 505
Target Start/End: Original strand, 79557 - 79615
Alignment:
Q  450 ataagttgtaattgaactataaaactttgtttttg---actacatatgcaatgtatatg 505  Q
    |||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||    
T  79557 ataagttgtaattgaactattaaactttgtttttggctactacatatgcaatgtatatg 79615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 16376597 - 16376545
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  16376597 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 16376545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 40969068 - 40969120
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  40969068 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 40969120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 21342010 - 21342053
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  21342010 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 21342053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 38163381 - 38163338
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  38163381 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 38163338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 21670158 - 21670212
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    ||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||    
T  21670158 actacatctacaatgtatatgacctgtgcggcagcacgggtggaaagtctagtat 21670212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 21804614 - 21804572
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  21804614 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 21804572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 31373643 - 31373685
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  31373643 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 31373685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 33916989 - 33916947
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  33916989 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 33916947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 42242196 - 42242154
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  42242196 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 42242154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 495 - 540
Target Start/End: Complemental strand, 17178279 - 17178234
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    
T  17178279 caatgtatatgacccatgcggcagcacgggtggaaagtctagtata 17178234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 27138569 - 27138525
Alignment:
Q  496 aatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||    
T  27138569 aatgtatatgacctgtgcggcagcacgggtggaaagtctagtata 27138525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 27903469 - 27903417
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||| ||||||||||||||||||||||||||||| ||||||||    
T  27903469 actacatctacaatatatatgacccgtgcggcagcacgggtggaaagtctagt 27903417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 3840683 - 3840641
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  3840683 caatgtatatgactcgtgcggcagcacgggtggaaagtctagt 3840641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 1729425 - 1729392
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||||||||||||||||||    
T  1729425 aaaatttgcttatattttaaaacggagggagtac 1729392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 528
Target Start/End: Original strand, 31097899 - 31097932
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||||||||||||||||||||||||||||||    
T  31097899 caatgtatatgacccgtgcggcagcacgggtgga 31097932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 46658844 - 46658877
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||||||||||||||||||    
T  46658844 aaaatttgcttatattttaaaacggagggagtac 46658877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 28003206 - 28003174
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  28003206 aaaatttgcttatattttaaaacggagggagta 28003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 37066294 - 37066326
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  37066294 aaaatttgcttatattttaaaacggagggagta 37066326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 498 - 540
Target Start/End: Original strand, 21656818 - 21656860
Alignment:
Q  498 tgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||||||||||| || |||||||||||| |||||||||||    
T  21656818 tgtatatgacccgtgtggtagcacgggtggaaagtctagtata 21656860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 523
Target Start/End: Original strand, 24924256 - 24924294
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgg 523  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  24924256 actacatctacaatgtatatgacccgtgcggcagcacgg 24924294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 43933596 - 43933546
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtcta 535  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||| ||||||    
T  43933596 actacatctacaatgtatatgacccttgcggtagcacgggtggaaagtcta 43933546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 46578377 - 46578407
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggag 141  Q
    |||||||||||||||||||||||||||||||    
T  46578377 aaaatttgcttatattttaaaacggagggag 46578407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 3498322 - 3498293
Alignment:
Q  111 aaaatttgcttatattttaaaacggaggga 140  Q
    ||||||||||||||||||||||||||||||    
T  3498322 aaaatttgcttatattttaaaacggaggga 3498293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 16810929 - 16810958
Alignment:
Q  115 tttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||||||||||||||    
T  16810929 tttgcttatattttaaaacggagggagtac 16810958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 27942437 - 27942470
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||||||||||||| |||||||||||||||    
T  27942437 aaaatttgcttatattttgaaacggagggagtac 27942470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 3e-32; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 6301029 - 6300950
Alignment:
Q  19 taaatggctctgtattttatgcttctaaactccatctccaaggtgtattaatcaaagcacaagattgttgtttcctatac 98  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6301029 taaatgactctgtatcttatgcttctaaactccatctccaaggtgtattaatcaaagcacaagattgttgtttcctatac 6300950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 6307839 - 6307760
Alignment:
Q  19 taaatggctctgtattttatgcttctaaactccatctccaaggtgtattaatcaaagcacaagattgttgtttcctatac 98  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6307839 taaatgactctgtatcttatgcttctaaactccatctccaaggtgtattaatcaaagcacaagattgttgtttcctatac 6307760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 402 - 537
Target Start/End: Complemental strand, 6300847 - 6300709
Alignment:
Q  402 tattattttgagacgaatgaagtactataaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttgactac---atatgcaat 498  Q
    ||||||||||||| |||   ||||||| ||||| ||||| |||| ||||||| |||||||||| |||| |||||||||||||| ||||   |||| ||||    
T  6300847 tattattttgagatgaacagagtactaaaaaataatgacattaaaactataaattgtaattgagctattaaactttgtttttgcctactagatatacaat 6300748  T
Q  499 gtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  6300747 gtatatgacccgtgcggcagcacgggtgcatagtctagt 6300709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 402 - 537
Target Start/End: Complemental strand, 6307657 - 6307519
Alignment:
Q  402 tattattttgagacgaatgaagtactataaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttgactac---atatgcaat 498  Q
    ||||||||||||| |||   ||||||| ||||| ||||| |||| ||||||| |||||||||| |||| |||||||||||||| ||||   |||| ||||    
T  6307657 tattattttgagatgaacagagtactaaaaaataatgacattaaaactataaattgtaattgagctattaaactttgtttttgcctactagatatacaat 6307558  T
Q  499 gtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  6307557 gtatatgacccgtgcggcagcacgggtgcatagtctagt 6307519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 6300929 - 6300868
Alignment:
Q  181 tgctataagccactaatgtttcgttttcccaatggccattatagttggaatacgaactgatt 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  6300929 tgctataagccactaatgtttcattttcccaatggccattatagttggaatacaaactgatt 6300868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 6307739 - 6307678
Alignment:
Q  181 tgctataagccactaatgtttcgttttcccaatggccattatagttggaatacgaactgatt 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  6307739 tgctataagccactaatgtttcattttcccaatggccattatagttggaatacaaactgatt 6307678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 8539730 - 8539785
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||||||||||    
T  8539730 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtata 8539785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 3593070 - 3593122
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  3593070 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 3593122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 537
Target Start/End: Complemental strand, 162786 - 162669
Alignment:
Q  423 gtactataaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttg---actacatatgcaatgtatatgacccgtgcggcagc 519  Q
    |||||| ||||| ||||| |||| | |||||||| ||||||||||||  || |||| |||     ||||||| |  ||||||||||||||||||||||||    
T  162786 gtactaaaaaataatgacattaaaattataagttataattgaactattgaattttgctttgacctactacattttgaatgtatatgacccgtgcggcagc 162687  T
Q  520 acgggtggatagtctagt 537  Q
    ||||||||| ||||||||    
T  162686 acgggtggaaagtctagt 162669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 28099639 - 28099596
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  28099639 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 28099596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 33646129 - 33646172
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  33646129 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 33646172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 2266963 - 2267005
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  2266963 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 2267005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 12597307 - 12597265
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  12597307 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 12597265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 15044899 - 15044953
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    ||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||    
T  15044899 actacatctacaatgtatatgacctgtgcggcagcacgggtggaaagtctagtat 15044953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 13533944 - 13533997
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||| | |||||||||||||||||||||||||||||||||| | |||||||    
T  13533944 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagta 13533997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 1405615 - 1405563
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  1405615 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagt 1405563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 528
Target Start/End: Complemental strand, 8657175 - 8657073
Alignment:
Q  429 taaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttg---actacatatgcaatgtatatgacccgtgcggcagcacgggt 525  Q
    |||||| ||||| |||| | |||||||||  |||| | ||||||| |||| |||||   ||||||  | |||||||||||||||||||||||||||||||    
T  8657175 taaaattatgacattaaaattataagttgggattgtattataaaattttgcttttgtctactacacttacaatgtatatgacccgtgcggcagcacgggt 8657076  T
Q  526 gga 528  Q
    |||    
T  8657075 gga 8657073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 19997852 - 19997892
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtcta 535  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  19997852 caatgtatatgacccgtgcggcagcacgggtggaaagtcta 19997892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 540
Target Start/End: Complemental strand, 14986433 - 14986388
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||    
T  14986433 caatgtatatgacccgtgcagcagcacgggtgcaaagtctagtata 14986388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 2005615 - 2005659
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||    
T  2005615 caatgtatatgacccgtgcggccgcacgagtggaaagtctagtat 2005659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 501 - 537
Target Start/End: Original strand, 2737142 - 2737178
Alignment:
Q  501 atatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2737142 atatgacccgtgcggcagcacgggtggatggtctagt 2737178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 14804275 - 14804307
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  14804275 aaaatttgcttatattttaaaacggagggagta 14804307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 17202609 - 17202661
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||  ||||||||||||||||||| ||||||||    
T  17202609 actacatctacaatgtatatgacttgtgcggcagcacgggtggaaagtctagt 17202661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 145
Target Start/End: Complemental strand, 22341986 - 22341956
Alignment:
Q  115 tttgcttatattttaaaacggagggagtacc 145  Q
    |||||||||||||||||||||||||||||||    
T  22341986 tttgcttatattttaaaacggagggagtacc 22341956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 10731585 - 10731618
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||||||||||||| |||||||||||||||    
T  10731585 aaaatttgcttatattttgaaacggagggagtac 10731618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Complemental strand, 24570796 - 24570763
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||||||||||||||||| |||||||||||||||    
T  24570796 caatgtatatgacccgtgtggcagcacgggtgga 24570763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Complemental strand, 33289112 - 33289079
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||| |||||||||||||||||||||||||||||    
T  33289112 caatctatatgacccgtgcggcagcacgggtgga 33289079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 23353674 - 23353619
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||||||||||    
T  23353674 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtata 23353619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 18997887 - 18997929
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18997887 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 18997929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 15961319 - 15961363
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  15961319 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtat 15961363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 6299062 - 6299019
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  6299062 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 6299019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 995857 - 995815
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  995857 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 995815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 10478124 - 10478166
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  10478124 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 10478166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 18175568 - 18175610
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18175568 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 18175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 30473926 - 30473884
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  30473926 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 30473884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 32110903 - 32110861
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  32110903 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 32110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 18842081 - 18842134
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||| | |||||||||||||||||||||||| ||||||||| |||||||||    
T  18842081 actacatctacaatgtatatgacccgtgcggcagaacgggtggaaagtctagta 18842134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 11725367 - 11725419
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | ||||||||||||||||||| |||||||||||||| ||||||||    
T  11725367 actacatctacaatgtatatgacccgtgcagcagcacgggtggaaagtctagt 11725419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 28583032 - 28583084
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  28583032 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagt 28583084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 39997868 - 39997920
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  39997868 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaattctagt 39997920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 429 - 528
Target Start/End: Complemental strand, 405465 - 405363
Alignment:
Q  429 taaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttgactac-ata--tgcaatgtatatgacccgtgcggcagcacgggt 525  Q
    |||||| ||||| |||| | |||||||||  |||| | ||||||| |||| ||||| |||| |||  | |||||||||||||||||||||||||||||||    
T  405465 taaaattatgacattaaaattataagttgggattgtattataaaattttgcttttgtctactatacttacaatgtatatgacccgtgcggcagcacgggt 405366  T
Q  526 gga 528  Q
    |||    
T  405365 gga 405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 19241013 - 19241055
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  19241013 caatgtatatgacccgtgcggcagcgcgggtggaaagtctagt 19241055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 19314197 - 19314239
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  19314197 caatgtatatgacccgtgcggcagcgcgggtggaaagtctagt 19314239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 44832228 - 44832186
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  44832228 caatgtatatgacccgtgcggcaacacgggtggaaagtctagt 44832186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 35122374 - 35122321
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||| | |||||||||||||||||||| ||||| ||||||| |||||||||    
T  35122374 actacatctacaatgtatatgacccgtgcgacagcaggggtggaaagtctagta 35122321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 44837086 - 44837139
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||| | |||||||||| ||||||||||||||||||||||| || ||||||    
T  44837086 actacatctacaatgtatataacccgtgcggcagcacgggtggaaaggctagta 44837139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 18569052 - 18569092
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtcta 535  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  18569052 caatgtatatgacccgtgcggtagcacgggtggaaagtcta 18569092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 24409053 - 24409105
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | ||||||||||||||||||||||| ||||||| || ||||||||    
T  24409053 actacatctacaatgtatatgacccgtgcggcaacacgggtagaaagtctagt 24409105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 11142644 - 11142687
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||| | |||||||||||| |||||||||||||||||||||    
T  11142644 actacatctacaatgtatatgatccgtgcggcagcacgggtgga 11142687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Original strand, 17695620 - 17695653
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||||||||| |||||||||||||||||||||||    
T  17695620 caatgtatattacccgtgcggcagcacgggtgga 17695653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 19293046 - 19293009
Alignment:
Q  109 tcaaaatttgcttatattttaaaacggagggagtacca 146  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  19293046 tcaaaatttgcttatattaaaaaacggagggagtacca 19293009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 32480308 - 32480341
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||||||||||||| |||||||||||||||    
T  32480308 aaaatttgcttatattttgaaacggagggagtac 32480341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 40169757 - 40169716
Alignment:
Q  500 tatatgacccgtgcggcagcacgggtggatagtctagtatag 541  Q
    |||||||||||||||| |||||||||||| || |||||||||    
T  40169757 tatatgacccgtgcggtagcacgggtggaaagactagtatag 40169716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Complemental strand, 44831176 - 44831143
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||||||||||||||| |||||||||||||||||    
T  44831176 caatgtatatgacccgagcggcagcacgggtgga 44831143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 485 - 539
Target Start/End: Complemental strand, 20655101 - 20655047
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  20655101 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtat 20655047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 40177228 - 40177273
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  40177228 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtata 40177273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 20874875 - 20874919
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  20874875 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtat 20874919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 34110839 - 34110883
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  34110839 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtat 34110883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 430 - 538
Target Start/End: Complemental strand, 8179864 - 8179752
Alignment:
Q  430 aaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttg----actacatatgcaatgtatatgacccgtgcggcagcacgggt 525  Q
    ||||||||||| |||| | ||||||||||||||||  ||| |||||||   ||||    ||||||| | |||| ||||||| ||||||||||||||||||    
T  8179864 aaaatgatgacattaaaattataagttgtaattgagttattaaacttttgctttggtctactacatctacaatatatatgatccgtgcggcagcacgggt 8179765  T
Q  526 ggatagtctagta 538  Q
    ||| |||||||||    
T  8179764 ggaaagtctagta 8179752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 33375941 - 33375996
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||    
T  33375941 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtttagtata 33375996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 528
Target Start/End: Original strand, 1396167 - 1396209
Alignment:
Q  486 ctacatatgcaatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  1396167 ctacatctgcaatgtatatgacccgtgcggcagcacgggtgga 1396209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 2398984 - 2398942
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  2398984 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 2398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 10729484 - 10729442
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  10729484 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 10729442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 16526348 - 16526306
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  16526348 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 16526306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 34107380 - 34107338
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  34107380 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 34107338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 38246907 - 38246865
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  38246907 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 38246865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 25099288 - 25099245
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  25099288 actacatctacaatgtatatgacccgtgcggcagcacgggtgga 25099245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 25158378 - 25158335
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  25158378 actacatctacaatgtatatgacccgtgcggcagcacgggtgga 25158335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 38283411 - 38283376
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtacca 146  Q
    ||||||||||||||||||||||||||||||||||||    
T  38283411 aaaatttgcttatattttaaaacggagggagtacca 38283376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 538
Target Start/End: Complemental strand, 17373198 - 17373160
Alignment:
Q  500 tatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  17373198 tatatgacccgtgcggcagcacgggtggaaagtctagta 17373160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 20362005 - 20361969
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtaccat 147  Q
    ||||||||||||||||| |||||||||||||||||||    
T  20362005 aaaatttgcttatatttaaaaacggagggagtaccat 20361969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 35245720 - 35245752
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  35245720 aaaatttgcttatattttaaaacggagggagta 35245752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 143
Target Start/End: Original strand, 22635426 - 22635457
Alignment:
Q  112 aaatttgcttatattttaaaacggagggagta 143  Q
    ||||||||||||||||||||||||||||||||    
T  22635426 aaatttgcttatattttaaaacggagggagta 22635457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 9005057 - 9005091
Alignment:
Q  109 tcaaaatttgcttatattttaaaacggagggagta 143  Q
    ||||||||||||||||||| |||||||||||||||    
T  9005057 tcaaaatttgcttatatttaaaaacggagggagta 9005091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 19784562 - 19784529
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||||||||||||| |||||||||||||||    
T  19784562 aaaatttgcttatattttgaaacggagggagtac 19784529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 20914768 - 20914739
Alignment:
Q  115 tttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||||||||||||||    
T  20914768 tttgcttatattttaaaacggagggagtac 20914739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 21369389 - 21369418
Alignment:
Q  115 tttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||||||||||||||    
T  21369389 tttgcttatattttaaaacggagggagtac 21369418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Complemental strand, 30088744 - 30088711
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||||||||||||||||||||||||| ||||    
T  30088744 caatgtatatgacccgtgcggcagcacggatgga 30088711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Complemental strand, 30096318 - 30096285
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||||||||||| |||||||||||||||||||||    
T  30096318 caatgtatatgatccgtgcggcagcacgggtgga 30096285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 540
Target Start/End: Complemental strand, 12090501 - 12090456
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  12090501 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtata 12090456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 540
Target Start/End: Complemental strand, 33139513 - 33139468
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  33139513 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtata 33139468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 16905004 - 16904952
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  16905004 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 16904952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 37590856 - 37590804
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  37590856 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 37590804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 537
Target Start/End: Original strand, 18209623 - 18209740
Alignment:
Q  423 gtactataaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttg---actacatatgcaatgtatatgacccgtgcggcagc 519  Q
    |||||| ||||| ||||| |||| | |||||||| ||||||||||||  || |||| |||     ||||||| |  ||||||||||||||||||||||||    
T  18209623 gtactaaaaaataatgacattaaaattataagttataattgaactattgaattttgctttgacctactacattttgaatgtatatgacccgtgcggcagc 18209722  T
Q  520 acgggtggatagtctagt 537  Q
    ||||||||| ||||||||    
T  18209723 acgggtggaaagtctagt 18209740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 30824964 - 30824921
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  30824964 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 30824921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 37651853 - 37651896
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  37651853 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 37651896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 48118592 - 48118533
Alignment:
Q  479 tttttgactacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||| |||||| | ||||||||||||| |||||||||||||||||||| |||||||||    
T  48118592 tttttgtctacatctacaatgtatatgactcgtgcggcagcacgggtggaaagtctagta 48118533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 31966011 - 31965969
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  31966011 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 31965969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 46256211 - 46256261
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtcta 535  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||    
T  46256211 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtcta 46256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 52434811 - 52434853
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  52434811 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 52434853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 47142852 - 47142800
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||| ||||||||||||||||||| ||||||||    
T  47142852 actacatctacaatgtatatgaccagtgcggcagcacgggtggaaagtctagt 47142800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 44376131 - 44376088
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  44376131 actacatctacaatgtatatgacccgtgcggcagcacgggtgga 44376088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 16917930 - 16917888
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||||||| |||||| ||||||||    
T  16917930 caatgtatatgacccgtgcggcagcacaggtggaaagtctagt 16917888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 48079628 - 48079661
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    ||||||||||||||||||||||||||||||||||    
T  48079628 aaaatttgcttatattttaaaacggagggagtac 48079661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 51126133 - 51126101
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  51126133 aaaatttgcttatattttaaaacggagggagta 51126101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 51975236 - 51975268
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  51975236 aaaatttgcttatattttaaaacggagggagta 51975268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 52256854 - 52256886
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  52256854 aaaatttgcttatattttaaaacggagggagta 52256886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 527
Target Start/End: Original strand, 11238181 - 11238212
Alignment:
Q  496 aatgtatatgacccgtgcggcagcacgggtgg 527  Q
    ||||||||||||||||||||||||||||||||    
T  11238181 aatgtatatgacccgtgcggcagcacgggtgg 11238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 18258255 - 18258212
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||||||||||||||||||||||||| | || |||||||||    
T  18258255 caatgtatatgacccgtgcggcagcacggatagacagtctagta 18258212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 526
Target Start/End: Complemental strand, 53143304 - 53143273
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtg 526  Q
    ||||||||||||||||||||||||||||||||    
T  53143304 caatgtatatgacccgtgcggcagcacgggtg 53143273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 35760768 - 35760810
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||| |||||||||||||||||||| | ||||||    
T  35760768 caatgtatatgactcgtgcggcagcacgggtggaaaatctagt 35760810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 39058399 - 39058357
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||||||| |||||| | ||||||    
T  39058399 caatgtatatgacccgtgcggcagcacaggtggaaaatctagt 39058357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 41387313 - 41387355
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||    
T  41387313 caatgtatatgacccgtacggcagcacggatggaaagtctagt 41387355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Original strand, 19745245 - 19745278
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||||||||||||||||||||| |||||||||||    
T  19745245 caatgtatatgacccgtgcggccgcacgggtgga 19745278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Complemental strand, 19794561 - 19794528
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||||||||||||||||||||| |||||||||||    
T  19794561 caatgtatatgacccgtgcggccgcacgggtgga 19794528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 23710863 - 23710834
Alignment:
Q  111 aaaatttgcttatattttaaaacggaggga 140  Q
    ||||||||||||||||||||||||||||||    
T  23710863 aaaatttgcttatattttaaaacggaggga 23710834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 528
Target Start/End: Complemental strand, 23976748 - 23976715
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||| |||||||||||||||||||||||||||||    
T  23976748 caatatatatgacccgtgcggcagcacgggtgga 23976715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 49745491 - 49745458
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||| |||||||||||||||||||||||||    
T  49745491 aaaatttgattatattttaaaacggagggagtac 49745458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 54787012 - 54786975
Alignment:
Q  109 tcaaaatttgcttatattttaaaacggagggagtacca 146  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  54787012 tcaaaatttgcttatattaaaaaacggagggagtacca 54786975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 41664697 - 41664742
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  41664697 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtata 41664742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 8700438 - 8700490
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  8700438 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 8700490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 19596415 - 19596363
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  19596415 actacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 19596363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 44902268 - 44902311
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  44902268 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 44902311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 6120739 - 6120781
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  6120739 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 6120781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 18351738 - 18351780
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18351738 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 18351780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 20545012 - 20545054
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  20545012 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 20545054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 27944838 - 27944796
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  27944838 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 27944796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 41663424 - 41663469
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    
T  41663424 caatgtatatgacccatgcggcagcacgggtggaaagtctagtata 41663469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 42442151 - 42442196
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  42442151 caatgtatatgacccgtgcggcaacacgggtggaaagtctagtata 42442196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 25889078 - 25889036
Alignment:
Q  498 tgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  25889078 tgtatatgacccgtgcggcagcacgagtggaaagtctagtata 25889036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 31424186 - 31424236
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtcta 535  Q
    ||||||| | ||||||||||||| |||||||||||||||||||| ||||||    
T  31424186 actacatctacaatgtatatgactcgtgcggcagcacgggtggaaagtcta 31424236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 529
Target Start/End: Original strand, 31572468 - 31572502
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggat 529  Q
    |||||||||||||||||||||||||||||||||||    
T  31572468 caatgtatatgacccgtgcggcagcacgggtggat 31572502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 501 - 537
Target Start/End: Original strand, 17839249 - 17839285
Alignment:
Q  501 atatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17839249 atatgacccgtgcggcagcacgggtggatggtctagt 17839285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 26567748 - 26567780
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  26567748 aaaatttgcttatattttaaaacggagggagta 26567780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 540
Target Start/End: Original strand, 2988906 - 2988953
Alignment:
Q  493 tgcaatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    |||| |||||||||||| |||||||||||||||| | |||||||||||    
T  2988906 tgcattgtatatgacccatgcggcagcacgggtgaaaagtctagtata 2988953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 40340581 - 40340614
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||||||||||||| |||||||||||||||    
T  40340581 aaaatttgcttatattttgaaacggagggagtac 40340614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 4266568 - 4266613
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtata 540  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  4266568 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtata 4266613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 29942205 - 29942249
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  29942205 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtat 29942249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 539
Target Start/End: Complemental strand, 38913789 - 38913745
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagtat 539  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  38913789 caatgtatatgacccgtgcggcagcacgggtggaaagtctagtat 38913745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 1231983 - 1232026
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  1231983 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 1232026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 2951408 - 2951365
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  2951408 caatgtatatgacccgtgcggcagcacgggtggaaagtctagta 2951365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 9216218 - 9216260
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  9216218 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 9216260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 18855275 - 18855233
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18855275 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 18855233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 31018242 - 31018200
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  31018242 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 31018200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 34888728 - 34888686
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  34888728 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 34888686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 52957063 - 52957105
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  52957063 caatgtatatgacccgtgcggcagcacgggtggagagtctagt 52957105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 18706561 - 18706508
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||| | ||||||||||||| |||||||||||||||||||| |||||||||    
T  18706561 actacatctacaatgtatatgactcgtgcggcagcacgggtggaaagtctagta 18706508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 23482759 - 23482707
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | ||||||||||||| |||||||||||||||||||| ||||||||    
T  23482759 actacatctacaatgtatatgactcgtgcggcagcacgggtggaaagtctagt 23482707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 528
Target Start/End: Complemental strand, 29387998 - 29387896
Alignment:
Q  429 taaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttg---actacatatgcaatgtatatgacccgtgcggcagcacgggt 525  Q
    |||||| ||||| |||| | |||||||||  |||| | ||||||| ||||||||||   ||||||  | |||||||||||||||||||||||| ||||||    
T  29387998 taaaattatgacattaaaattataagttgggattgtattataaaattttgtttttgtctactacacttacaatgtatatgacccgtgcggcagtacgggt 29387899  T
Q  526 gga 528  Q
    |||    
T  29387898 gga 29387896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 50326188 - 50326228
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtcta 535  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  50326188 caatgtatatgacccgtgcggcagcacgggtggaaagtcta 50326228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 52687166 - 52687114
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | |||||||||||||||||||| ||||||||||||| ||||||||    
T  52687166 actacatctacaatgtatatgacccgtgcgacagcacgggtggaaagtctagt 52687114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 2590467 - 2590509
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  2590467 caatgtatatgactcgtgcggcagcacgggtggaaagtctagt 2590509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 38444808 - 38444861
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||| | ||||||||||||||| ||||||| |||||||||| |||||||||    
T  38444808 actacatctacaatgtatatgacccatgcggcatcacgggtggaaagtctagta 38444861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 25378369 - 25378401
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  25378369 aaaatttgcttatattttaaaacggagggagta 25378401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 528
Target Start/End: Complemental strand, 28947495 - 28947463
Alignment:
Q  496 aatgtatatgacccgtgcggcagcacgggtgga 528  Q
    |||||||||||||||||||||||||||||||||    
T  28947495 aatgtatatgacccgtgcggcagcacgggtgga 28947463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 49363496 - 49363528
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagta 143  Q
    |||||||||||||||||||||||||||||||||    
T  49363496 aaaatttgcttatattttaaaacggagggagta 49363528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 35614244 - 35614287
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtgga 528  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  35614244 actacatttacaatgtatatgacccgtgcggtagcacgggtgga 35614287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 46518057 - 46518090
Alignment:
Q  111 aaaatttgcttatattttaaaacggagggagtac 144  Q
    |||||||||||||||||| |||||||||||||||    
T  46518057 aaaatttgcttatattttgaaacggagggagtac 46518090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 46461 - 46503
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  46461 caatgtatatgacccgtgcggcagcacgggtggaaagtctagt 46503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 528
Target Start/End: Original strand, 1035 - 1137
Alignment:
Q  429 taaaatgatgaccttaatactataagttgtaattgaactataaaactttgtttttg---actacatatgcaatgtatatgacccgtgcggcagcacgggt 525  Q
    |||||| ||||| |||| | |||||||||  |||| | ||||||| |||| |||||   ||||||  | |||||||||||||||||||||||||||||||    
T  1035 taaaattatgacattaaaattataagttgggattgtattataaaattttgcttttgtctactacacttacaatgtatatgacccgtgcggcagcacgggt 1134  T
Q  526 gga 528  Q
    |||    
T  1135 gga 1137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 149092 - 149049
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  149092 caatttatatgacccgtgcggcagcacgggtggaaagtctagta 149049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 5320 - 5278
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  5320 caatgtatatgtcccgtgcggcagcacgggtggaaagtctagt 5278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 6103 - 6061
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  6103 caatgtatatgacccgtgcggcagcacgggtggaaaatctagt 6061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Complemental strand, 6113 - 6071
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  6113 caatgtatatgacccgtgcggcagcacgggtggaaaatctagt 6071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 19524 - 19576
Alignment:
Q  485 actacatatgcaatgtatatgacccgtgcggcagcacgggtggatagtctagt 537  Q
    ||||||| | ||||||||| ||||||| |||||||||||||||| ||||||||    
T  19524 actacatctacaatgtataggacccgtacggcagcacgggtggaaagtctagt 19576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 14730 - 14772
Alignment:
Q  495 caatgtatatgacccgtgcggcagcacgggtggatagtctagta 538  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  14730 caatgtatatgacccgtgcggcaacacgggtgga-agtctagta 14772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 1863 - 1834
Alignment:
Q  111 aaaatttgcttatattttaaaacggaggga 140  Q
    ||||||||||||||||||||||||||||||    
T  1863 aaaatttgcttatattttaaaacggaggga 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University