View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_24 (Length: 435)
Name: NF20094_high_24
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 41378931 - 41378519
Alignment:
| Q |
18 |
ccaaaggggtaggcgtcttgtttggcataccaccttgtgggttatttggagggctaggaataaccgtgcttttaacaatgtggtaagttcagcggaggag |
117 |
Q |
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| T |
41378931 |
ccaaaggggtaggcgtcttgtttggcataccaccttgtgggttatttggagggataagaataaccgtatttttaacaatgtggtaagttcaacggaggag |
41378832 |
T |
|
| Q |
118 |
atttttgatgagattaaagtgttgacgtggaggtggagcctttctagaataaatattccgtcgtgtctgtattacgaatggtgctagaatctgagatttt |
217 |
Q |
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| T |
41378831 |
atttttgatgagattaaagtgttgatgtggaggtggagcctttctagaataaatatttcgtcgtgtctgtattatgaatggtgctggaattcgagatttt |
41378732 |
T |
|
| Q |
218 |
gcctccgtgtgtagggtcggtggcagttggggagtgtggggtttttggtgtgtagtaggttgttctggtgtttggcccttctgctggtaccttgcagctg |
317 |
Q |
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| T |
41378731 |
gcctccgtgtgtagggtcggtggcagttggggagtgtggggtttttggtgtgtgggaggttgttttggtgtttggcccttctgctggtaccttgcagctg |
41378632 |
T |
|
| Q |
318 |
ctggggttgctgatgttgttatgcagttgtggctgttttgctggtatagtgcagctgctg---ctgtatttttgctgcagtttgctgcacttaagtgggt |
414 |
Q |
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| T |
41378631 |
ctggggttgctgctgttgttatgcagttgtggctgttttgctggtatagtgcagctgctgcttctgtatttttgctgcagtttgctgcacttaagtgggt |
41378532 |
T |
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| Q |
415 |
gttttcctttgct |
427 |
Q |
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| T |
41378531 |
gttttcctttgct |
41378519 |
T |
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Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 47337100 - 47337003
Alignment:
| Q |
19 |
caaaggggtaggcgtcttgtttggcataccaccttgtgggttatttggagggctaggaataaccgtgcttttaacaatgtggtaagttcagcggagga |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
47337100 |
caaatgggtaggcgtcttgtttggcataccaccttgtgggttatttggagggctaggaataaccgtatttttaacaatgtggtaagtttagcggagga |
47337003 |
T |
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