View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_26 (Length: 421)
Name: NF20094_high_26
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 22013315 - 22012906
Alignment:
| Q |
1 |
aatgtggatatacctattacacttgtaactggaaagaacacgatcgatctcctgagtttaacagtgggattacaggttcatattttcttattatacataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22013315 |
aatgtggatatacctattacacttgtaactggaaagaacacgatcgatctcctgagtttaacagtgggattacaggttcatattttcttattatacataa |
22013216 |
T |
|
| Q |
101 |
gtaaagcatatacaacaacaaaatcatggtttttaatatgcatcatctggttaatgtcaattttacacgccacagaactatggagcattttatgacacag |
200 |
Q |
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| T |
22013215 |
gtaaagcatatacaacaacaaaatcatggtttttaatatgcatcatctggttaatgtcaattttacacgccacagaactatggagcattttatgacacag |
22013116 |
T |
|
| Q |
201 |
tgggtgcggggatcactggtccggtaatattgaaaggtttgaaaaatggcagtagcgtcgatctctcctcacagcaatggacatatcaggttagtctcgg |
300 |
Q |
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| T |
22013115 |
tgggtgcggggatcactggtccggtaatattgaaaggcttgaaaaatggcagtagcgtcgatctcacctcacagcaatggacatatcaggttagtctcgg |
22013016 |
T |
|
| Q |
301 |
cttgacttaaggcctgtttttgtttctccttttgagttttggtgaattaattacattggctgtatttttgtgaatgcaggttggccttcaaggtgaattt |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22013015 |
cttcacttaaggcctgtttttgtttctccttttgagttttggtgaattaattacattggctgtatttttgtgaatgcaggttggccttcaaggtgaattt |
22012916 |
T |
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| Q |
401 |
gtaggtctgt |
410 |
Q |
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|||||||||| |
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| T |
22012915 |
gtaggtctgt |
22012906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 40081006 - 40081084
Alignment:
| Q |
173 |
cagaactatggagcattttatgacacagtgggtgcggggatcactggtccggtaatattgaaaggtttgaaaaatggca |
251 |
Q |
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| T |
40081006 |
cagaactatggagccttttttgacacagtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggca |
40081084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 40093309 - 40093387
Alignment:
| Q |
173 |
cagaactatggagcattttatgacacagtgggtgcggggatcactggtccggtaatattgaaaggtttgaaaaatggca |
251 |
Q |
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|||||||||||||| |||| ||||||| ||| ||||||||||| ||||| || ||||||||||||||||| ||||||| |
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| T |
40093309 |
cagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggca |
40093387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 40062657 - 40062735
Alignment:
| Q |
173 |
cagaactatggagcattttatgacacagtgggtgcggggatcactggtccggtaatattgaaaggtttgaaaaatggca |
251 |
Q |
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|||||||||||||| |||| ||||| | ||| ||||||||||| ||||| |||| ||||||||||||||| ||||||| |
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| T |
40062657 |
cagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggca |
40062735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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