View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_3 (Length: 821)
Name: NF20094_high_3
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_3 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Complemental strand, 33681054 - 33680570
Alignment:
| Q |
15 |
aatatccaccatgataaacggcatttatatttcaactagaaaccaatacaaatgctgggtgaatcggtcgatcacttaactatatatattgcacctatag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33681054 |
aatatccaccatgataaacggcatttatatttcaactagaaaccaatacaaatgctgggtgagtcggtcgatcacttaactatatatattgcacctatag |
33680955 |
T |
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| Q |
115 |
tatgacttatgagattagaaaaagattatggtacaaatttatttatttgaaagttgcggcatttatattgcatcgttgtgattgtctaannnnnnnn--- |
211 |
Q |
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| T |
33680954 |
tatgacttatgagattagaaaaagattatggtacaaatttatttatttgaaagttgcggcatttatactgcatcgttgtgattgtctaattttttttttt |
33680855 |
T |
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| Q |
212 |
-aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggcgtgctgagagaga--ctcactcagaaatgtacaaagtcacagt |
308 |
Q |
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| T |
33680854 |
taagaagtcaaaatggaatataatattaaaccaagagtgaatcaccccgcacaaggcgtactgagagagagactcactcagaaatgtacaaagtcacagt |
33680755 |
T |
|
| Q |
309 |
ttatgccacactgataggcacctgaagagaaagcgaataataaacaattacatggaaacacttatattgagaggctgatttgatttcaaccacataaaa- |
407 |
Q |
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| T |
33680754 |
ttatgccacactgagaagcacctaaagagaaagcgaataataaacaattacgtggaaacacttatgctgagaggctgatttgatttcaaccacataaaag |
33680655 |
T |
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| Q |
408 |
aattcagcttcactttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgttcttttcatataac |
492 |
Q |
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| T |
33680654 |
aattcagtttcactttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgttcttttcatataac |
33680570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 489 - 804
Target Start/End: Complemental strand, 33678472 - 33678157
Alignment:
| Q |
489 |
taactaaatggttagcaggagtatcagtcaaacaagtattgaaacaagtcatatggaagtgttcagctcgcatcagtcacctactagctttagcatcatc |
588 |
Q |
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| T |
33678472 |
taactaaatggttagcaggagtatcagtcaaacaagtattgaaacaagtcatatggaagtgttcagctcgcatcagtcacctactagctttagcatcatc |
33678373 |
T |
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| Q |
589 |
atatattttgtctaattaagggtatagtaacctccataattggattcagtaactaaaataagcatcatatctacataatgatatagacaccctaatttca |
688 |
Q |
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| T |
33678372 |
atatattttgtctaattaagggtatagtaacctccataattggattcagtaactaaaataagcatcatatctacataatgatatagacaccctaatttca |
33678273 |
T |
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| Q |
689 |
aggatcagaataaatttcccaagtccattcagcctaccaattaatccactgaaattaccatggactgccatcgcttgtcctccatgagtagttttgaata |
788 |
Q |
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| T |
33678272 |
aggatcagaataaattccccaagtccattcagcctaccaattaatccactgaaattaccatggactgccatcgcttgtcctccatgagtagttttgaata |
33678173 |
T |
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| Q |
789 |
tttcccagcactccat |
804 |
Q |
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||||||||||| |||| |
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| T |
33678172 |
tttcccagcaccccat |
33678157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 489
Target Start/End: Original strand, 20114537 - 20114646
Alignment:
| Q |
381 |
ggctgatttgatttcaaccacataaaa-aattcagcttcactttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgtt |
479 |
Q |
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| T |
20114537 |
ggctgatttgttttcaaccacataaacgaattcaacttcactttgtcagaaagggtacacggatcataagccacattttttaagctgcggttgtttcgtt |
20114636 |
T |
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| Q |
480 |
cttttcatat |
489 |
Q |
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| T |
20114637 |
ctttccatat |
20114646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 37124942 - 37124880
Alignment:
| Q |
212 |
aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggcgtgctga |
274 |
Q |
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| T |
37124942 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcactctgcacaaggcgtgctga |
37124880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 248088 - 248033
Alignment:
| Q |
212 |
aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggc |
267 |
Q |
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| T |
248088 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcgctccgcacaaggc |
248033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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