View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_32 (Length: 383)
Name: NF20094_high_32
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 29858245 - 29857890
Alignment:
| Q |
18 |
aataaggaagctgttgaggttttgtagtttcaccaactatgcgtacccgagttattgtttcttcatagcatacaacagt---agaaacttttgaaactgt |
114 |
Q |
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| T |
29858245 |
aataaggaagctgttgaggttttgtagtttcgccaac-----gtacctgagttatggtttcttcatagcatacaacagttcgagaaacttttgaaactgt |
29858151 |
T |
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| Q |
115 |
gttggaattccatgtgattcttaaaagggtgtgtgtgagaggattcaagttggtttgtgtatgagaatgaaagggnnnnnnnn---ctagaagcacattt |
211 |
Q |
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| T |
29858150 |
gttggaattccgtgtgattcttaaaagggtgtgtgtgagaggattcaagttggtttgtgtatgagaatgaaagaagaagaaaaaaactagaagcactttt |
29858051 |
T |
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| Q |
212 |
ggatggagcttatttgccttagatgaagagagatttagatcatagtcttctcaaggattggagcttggttattctctaaaagtcttgaaatttcatctat |
311 |
Q |
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| T |
29858050 |
ggatggagcttatttcccttagatgaagagagatttagatcatagtcttctcagagattgaagcttggttattctctaaaagtcttgaaatttcatccat |
29857951 |
T |
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| Q |
312 |
aagaaagtggaaataacatggcatatgtgatttgggcatggcctgcaatctactgtttcat |
372 |
Q |
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| T |
29857950 |
aagaaagtggaaatagcatggcatatgtgatttgggcatggcctgcaatctactgtttcat |
29857890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 9683517 - 9683609
Alignment:
| Q |
29 |
tgttgaggttttgtagtttcaccaactatgcgtacccgagttattgtttcttcatagcatacaacagt---agaaacttttgaaactgtgttg |
118 |
Q |
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| T |
9683517 |
tgttgaggttttgttgtttcaccaactatgtgtagctgagttatggcttctccatagcatacaacagtttgagaagcttttgaatctgtgttg |
9683609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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