View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_34 (Length: 373)
Name: NF20094_high_34
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_34 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 26493161 - 26493511
Alignment:
| Q |
18 |
aaaggatggcataaaatttgtcgaaacaatttttcttcacaatttcatattgtttggactatcagcttaatttactgtttataacataagtgcttataag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26493161 |
aaaggatggcataaaatttgtcgaaacaatttttcttcacaatttcatattgtttggactaacagcttaatttactgtttataacataagtgcttataag |
26493260 |
T |
|
| Q |
118 |
tgcttatgtctaagttttcttggagagcttatggaagtaagctcataacaactgatggcatgtcataagctctccgaaacagtctcaaaggttatgccag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26493261 |
tgcttatgtctaagttttcttggagagcttatggaagtaagctcaaaacaactgatggcatgtcataagctctccgaaacagtctcaaaggttatgccag |
26493360 |
T |
|
| Q |
218 |
aagataagctagctcaagtaagtcaatccaaacagacccttaacaataggcataacttcaaagacggacagatcctctatatgatataggggatctatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
26493361 |
aagataagctagctcaagtaagtcaatccaaacagacccttaacaataggcataacttcaaagacggacatatcccctatatgatataggggatctatat |
26493460 |
T |
|
| Q |
318 |
gttaaaatgctcaacataacaccgacaattcaaatcgaaggcatctctgct |
368 |
Q |
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| T |
26493461 |
gttaaaatgctcaacataacaccgacaattcaaatcgaaggcatgtctgct |
26493511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 42646798 - 42646830
Alignment:
| Q |
228 |
agctcaagtaagtcaatccaaacagacccttaa |
260 |
Q |
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| T |
42646798 |
agctcaagtaagtcaatccaaacagacccttaa |
42646830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 12242758 - 12242706
Alignment:
| Q |
135 |
tcttggagagcttatggaagtaagctcataacaactgatg-gcatgtcataag |
186 |
Q |
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| T |
12242758 |
tcttggagagcttatggaagtaagctgaaaacaactaatgttcatgtcataag |
12242706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 30918128 - 30918170
Alignment:
| Q |
128 |
taagttttcttggagagcttatggaagtaagctcataacaact |
170 |
Q |
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| T |
30918128 |
taagttttcttggagagcttatggaaataagctgaaaacaact |
30918170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 1664418 - 1664474
Alignment:
| Q |
149 |
tggaagtaagctcataacaactgatgg-catgtcataagctctccgaaacagtctca |
204 |
Q |
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| T |
1664418 |
tggaaataaactcaaaacaactaatggacatgtcataagctctcccaaacagtctca |
1664474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 6859 - 6915
Alignment:
| Q |
149 |
tggaagtaagctcataacaactgatgg-catgtcataagctctccgaaacagtctca |
204 |
Q |
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| T |
6859 |
tggaaataaactcaaaacaactaatggacatgtcataagctctcccaaacagtctca |
6915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 27043772 - 27043740
Alignment:
| Q |
228 |
agctcaagtaagtcaatccaaacagacccttaa |
260 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
27043772 |
agctcaaataagtcaatccaaacagacccttaa |
27043740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 1125821 - 1125789
Alignment:
| Q |
128 |
taagttttcttggagagcttatggaagtaagct |
160 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
1125821 |
taagttatcttggagagcttatggaagtaagct |
1125789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 3887574 - 3887542
Alignment:
| Q |
228 |
agctcaagtaagtcaatccaaacagacccttaa |
260 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
3887574 |
agctcaaataagtcaatccaaacagacccttaa |
3887542 |
T |
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