View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_high_38 (Length: 345)

Name: NF20094_high_38
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_high_38
NF20094_high_38
[»] chr7 (1 HSPs)
chr7 (145-345)||(35451151-35451350)
[»] chr5 (4 HSPs)
chr5 (275-344)||(9860748-9860817)
chr5 (279-345)||(7367609-7367675)
chr5 (316-345)||(15024801-15024830)
chr5 (289-345)||(16609666-16609722)
[»] chr3 (1 HSPs)
chr3 (293-345)||(42529470-42529522)
[»] chr8 (1 HSPs)
chr8 (293-345)||(12020094-12020146)
[»] chr2 (2 HSPs)
chr2 (290-344)||(31827312-31827366)
chr2 (293-345)||(25726958-25727010)
[»] chr1 (2 HSPs)
chr1 (293-331)||(11391344-11391382)
chr1 (294-344)||(29561257-29561307)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 145 - 345
Target Start/End: Complemental strand, 35451350 - 35451151
Alignment:
Q  145 tgttaggcttaagtttgttggggctttcttatacactgtactatatacaacgaccacaacaaaacggtatcagccgtagtgccgttaccattttaaagga 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35451350 tgttaggcttaagtttgttggggctttcttatacactgtactatatacaacgaccacaacaaaacggtatcagccgtagtgccgttaccgttttaaagga 35451251  T
Q  245 attaatgnnnnnnnntaatcacaaactcaattgagctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 344  Q
    |||||||         ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35451250 attaatgaaaaaaaa-aatcacaaactcaattgatttatgggttaaaagagttggaggttttgggttcaaactcaaacgaatgagtaaatattaatctaa 35451152  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 9860817 - 9860748
Alignment:
Q  275 ttgagctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 344  Q
    |||||||| |||||||| |||||||||||  |||||||||||||| || || ||||||||| ||||||||    
T  9860817 ttgagctaagggttaaaggagttggaggtcctgagttcaaactcagacaaaggagtaaatactaatctaa 9860748  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 7367609 - 7367675
Alignment:
Q  279 gctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac 345  Q
    |||| |||||||| ||||||||||| ||| |||||||| |  ||||| |||||||||||||||||||    
T  7367609 gctaagggttaaaggagttggaggtcttgggttcaaacaccgacgaaggagtaaatattaatctaac 7367675  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Complemental strand, 15024830 - 15024801
Alignment:
Q  316 ctcaaacgaatgagtaaatattaatctaac 345  Q
    ||||||||||||||||||||||||||||||    
T  15024830 ctcaaacgaatgagtaaatattaatctaac 15024801  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 16609722 - 16609666
Alignment:
Q  289 aaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac 345  Q
    |||| |||| ||||||||| ||||||||||| | ||| || ||||||||||||||||    
T  16609722 aaaaaagtttgaggttttgggttcaaactcagatgaaggaataaatattaatctaac 16609666  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 42529470 - 42529522
Alignment:
Q  293 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac 345  Q
    |||||||||||  |||||||||||| ||||||| |||||||||||||||||||    
T  42529470 gagttggaggtcatgagttcaaacttaaacgaaagagtaaatattaatctaac 42529522  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 12020094 - 12020146
Alignment:
Q  293 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac 345  Q
    |||||||||||  || |||||||| |||| |||||||||||||||||||||||    
T  12020094 gagttggaggtcctgggttcaaacccaaatgaatgagtaaatattaatctaac 12020146  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 31827366 - 31827312
Alignment:
Q  290 aaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 344  Q
    ||||||||||||||  || |||||||| | ||| |||||||||||||||||||||    
T  31827366 aaagagttggaggtcatgtgttcaaacacgaacaaatgagtaaatattaatctaa 31827312  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 25727010 - 25726958
Alignment:
Q  293 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac 345  Q
    |||| ||||||| ||  |||||||| |||| ||||||||||||||||||||||    
T  25727010 gagtcggaggttatggattcaaactaaaacaaatgagtaaatattaatctaac 25726958  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 11391382 - 11391344
Alignment:
Q  293 gagttggaggttttgagttcaaactcaaacgaatgagta 331  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  11391382 gagttggaagttctgagttcaaactcaaacgaatgagta 11391344  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 29561257 - 29561307
Alignment:
Q  294 agttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 344  Q
    ||||| || |||||||||||||| || || |||||||||||||||||||||    
T  29561257 agttgaagattttgagttcaaacccatacaaatgagtaaatattaatctaa 29561307  T

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