View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_high_4 (Length: 718)

Name: NF20094_high_4
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_high_4
NF20094_high_4
[»] chr4 (12 HSPs)
chr4 (374-560)||(4089801-4089993)
chr4 (608-671)||(44362664-44362727)
chr4 (615-670)||(37496703-37496758)
chr4 (618-663)||(13307883-13307928)
chr4 (617-674)||(18513248-18513305)
chr4 (314-358)||(4089677-4089721)
chr4 (625-676)||(34589721-34589772)
chr4 (615-669)||(13117429-13117483)
chr4 (615-669)||(14465299-14465353)
chr4 (628-670)||(28663491-28663533)
chr4 (617-651)||(45615422-45615456)
chr4 (616-653)||(683068-683105)
[»] scaffold0314 (1 HSPs)
scaffold0314 (610-664)||(8953-9007)
[»] chr6 (8 HSPs)
chr6 (618-670)||(10031569-10031621)
chr6 (615-670)||(19369816-19369871)
chr6 (615-664)||(6751887-6751936)
chr6 (615-653)||(10158000-10158038)
chr6 (616-669)||(5579654-5579707)
chr6 (119-165)||(882743-882789)
chr6 (623-676)||(1334654-1334707)
chr6 (627-664)||(29959180-29959217)
[»] chr1 (4 HSPs)
chr1 (615-669)||(14332409-14332462)
chr1 (617-668)||(40176604-40176655)
chr1 (120-163)||(1514401-1514444)
chr1 (117-151)||(27500340-27500374)
[»] chr2 (8 HSPs)
chr2 (615-668)||(43586010-43586063)
chr2 (617-669)||(18512149-18512201)
chr2 (615-670)||(45000851-45000905)
chr2 (616-665)||(13501084-13501133)
chr2 (619-676)||(39399905-39399962)
chr2 (617-668)||(18570973-18571024)
chr2 (615-666)||(33884054-33884105)
chr2 (615-668)||(14373432-14373485)
[»] chr7 (11 HSPs)
chr7 (617-668)||(5937428-5937479)
chr7 (615-670)||(38134411-38134466)
chr7 (615-669)||(1885573-1885627)
chr7 (618-676)||(35238192-35238250)
chr7 (617-662)||(2144546-2144591)
chr7 (618-663)||(48964070-48964115)
chr7 (619-659)||(2143862-2143902)
chr7 (615-674)||(25956442-25956499)
chr7 (618-653)||(44172898-44172933)
chr7 (615-668)||(22801746-22801799)
chr7 (618-663)||(28635178-28635223)
[»] chr8 (8 HSPs)
chr8 (615-669)||(24295142-24295196)
chr8 (618-668)||(27733848-27733898)
chr8 (616-669)||(26915246-26915299)
chr8 (617-669)||(42874522-42874574)
chr8 (616-659)||(31119097-31119140)
chr8 (610-669)||(31548293-31548352)
chr8 (100-163)||(16972048-16972113)
chr8 (616-669)||(34073984-34074037)
[»] chr5 (7 HSPs)
chr5 (623-669)||(30080514-30080560)
chr5 (617-667)||(38784808-38784858)
chr5 (616-653)||(10009842-10009879)
chr5 (615-662)||(10010561-10010608)
chr5 (608-670)||(19167574-19167637)
chr5 (616-666)||(26205766-26205816)
chr5 (383-472)||(42594443-42594532)
[»] chr3 (5 HSPs)
chr3 (615-669)||(49179720-49179774)
chr3 (608-664)||(14338481-14338537)
chr3 (117-165)||(38332536-38332584)
chr3 (603-653)||(20691335-20691385)
chr3 (615-653)||(44427857-44427895)
[»] scaffold0024 (1 HSPs)
scaffold0024 (626-669)||(18124-18167)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 9e-35; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 374 - 560
Target Start/End: Original strand, 4089801 - 4089993
Alignment:
Q  374 gttaggaacgatattgcaggaattgtgaaggaaaaggacttgaaatctcttctcgagtttggtggggttgacggtgtttgtgaagttcttcgtggtcaac 473  Q
    |||| ||| |||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||   | |||||||| ||||| ||||||   |    
T  4089801 gttacgaatgatattgctggaattgtgaaggagaaggacttgaagtctcttcttgagtttggtggggttggtagagtttgtgatgttctccgtggt---c 4089897  T
Q  474 aaattcatcactcatcatcacaggt-ataattctcttcaatatc----atggatgtttaatc----atataaatgctttcttggtttattaagtgt 560  Q
    ||||||||||||||||| || |||| ||||||||||| ||||||    |||||||||| |||    ||||||||||||||||||||||||||||||    
T  4089898 aaattcatcactcatcagcagaggtaataattctctttaatatcatcgatggatgtttgatcaaatatataaatgctttcttggtttattaagtgt 4089993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 671
Target Start/End: Complemental strand, 44362727 - 44362664
Alignment:
Q  608 tctgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcag 671  Q
    |||||| || |||| ||||||||| || |||||||||||||||||| |||||||||||||||||    
T  44362727 tctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtcag 44362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 670
Target Start/End: Complemental strand, 37496758 - 37496703
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 670  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  37496758 ccgacacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtca 37496703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 663
Target Start/End: Complemental strand, 13307928 - 13307883
Alignment:
Q  618 acacatgtgattacgttgaattatgtcattttctcacaattttatc 663  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||    
T  13307928 acacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 674
Target Start/End: Original strand, 18513248 - 18513305
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgt 674  Q
    ||||||| ||||||| ||||||||||||||||||||| | | ||||||||||| ||||    
T  18513248 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgt 18513305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 4089677 - 4089721
Alignment:
Q  314 actcactactactagcagtagcgtgtacaacaagaaatggcttca 358  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||    
T  4089677 actcactactactagaggtagcgtgtgcaacaagaaatggcttca 4089721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 676
Target Start/End: Original strand, 34589721 - 34589772
Alignment:
Q  625 tgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 676  Q
    ||||||| ||||||||||||||||||||| | | |||||||||||| |||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgt 34589772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 669
Target Start/End: Complemental strand, 13117483 - 13117429
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    ||||||| ||||||||| ||||||| ||||||||||||  |||||||| ||||||    
T  13117483 ccgacacttgtgattacattgaattttgtcattttctccaaattttattggtgtc 13117429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 669
Target Start/End: Original strand, 14465299 - 14465353
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    ||||||||| ||||||  ||||||||||||||||||||| | | |||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 628 - 670
Target Start/End: Complemental strand, 28663533 - 28663491
Alignment:
Q  628 ttacgttgaattatgtcattttctcacaattttatcggtgtca 670  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgtca 28663491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 617 - 651
Target Start/End: Original strand, 45615422 - 45615456
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttct 651  Q
    |||||||||||||||||| ||||||||||||||||    
T  45615422 gacacatgtgattacgttcaattatgtcattttct 45615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 653
Target Start/End: Complemental strand, 683105 - 683068
Alignment:
Q  616 cgacacatgtgattacgttgaattatgtcattttctca 653  Q
    |||||||||||||||| || ||||||||||||||||||    
T  683105 cgacacatgtgattacattcaattatgtcattttctca 683068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 610 - 664
Target Start/End: Complemental strand, 9007 - 8953
Alignment:
Q  610 tgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 664  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatcg 8953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 618 - 670
Target Start/End: Complemental strand, 10031621 - 10031569
Alignment:
Q  618 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 670  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtca 10031569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 615 - 670
Target Start/End: Complemental strand, 19369871 - 19369816
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 670  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  19369871 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtca 19369816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 664
Target Start/End: Original strand, 6751887 - 6751936
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 664  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  6751887 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatcg 6751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 653
Target Start/End: Complemental strand, 10158038 - 10158000
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctca 653  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  10158038 ccgacacatgtgattacattgaattatgtcattttctca 10158000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 669
Target Start/End: Complemental strand, 5579707 - 5579654
Alignment:
Q  616 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    |||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  5579707 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtc 5579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 882743 - 882789
Alignment:
Q  119 tcaaatttattgttcaactcatttttgcatgaaggtattcaaacata 165  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||    
T  882743 tcaaatttattgtttaactcacttttgcatgaatgtatccaaacata 882789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 676
Target Start/End: Complemental strand, 1334707 - 1334654
Alignment:
Q  623 tgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 676  Q
    ||||||||| |||||||||||| |||| ||| ||||||||| |||||| |||||    
T  1334707 tgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgt 1334654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 664
Target Start/End: Complemental strand, 29959217 - 29959180
Alignment:
Q  627 attacgttgaattatgtcattttctcacaattttatcg 664  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatcg 29959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 669
Target Start/End: Complemental strand, 14332462 - 14332409
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  14332462 ccgacatatgtgattacattgaattatgtcattttctca-aattttatcggtgtc 14332409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 40176655 - 40176604
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 668  Q
    ||||||||||||||| |||||| | |||||||||||| ||||||||||||||    
T  40176655 gacacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgt 40176604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 1514401 - 1514444
Alignment:
Q  120 caaatttattgttcaactcatttttgcatgaaggtattcaaaca 163  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||    
T  1514401 caaatttattgttcaactcatttttacatgaatgtatccaaaca 1514444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 27500340 - 27500374
Alignment:
Q  117 actcaaatttattgttcaactcatttttgcatgaa 151  Q
    |||||||||||||||||||||||||||| ||||||    
T  27500340 actcaaatttattgttcaactcatttttacatgaa 27500374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 668
Target Start/End: Original strand, 43586010 - 43586063
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 668  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  43586010 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatctgtgt 43586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 669
Target Start/End: Original strand, 18512149 - 18512201
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||    
T  18512149 gacacatgtgattacattgaattatattattttctcaaaattttatcggtgtc 18512201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 670
Target Start/End: Original strand, 45000851 - 45000905
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 670  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  45000851 ccgacacatatgattacattgaattgtgtcattttctca-aattttatcggtgtca 45000905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 665
Target Start/End: Original strand, 13501084 - 13501133
Alignment:
Q  616 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcgg 665  Q
    |||||| ||||||||| ||||||||||||||||||| | |||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatcgg 13501133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 676
Target Start/End: Complemental strand, 39399962 - 39399905
Alignment:
Q  619 cacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 676  Q
    ||||||||| || |||||||||||||||||||| | ||||| |||||||||| |||||    
T  39399962 cacatgtgaataggttgaattatgtcattttctaaaaatttcatcggtgtcaatgtgt 39399905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 18571024 - 18570973
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 668  Q
    ||||||| ||||||| ||||||||||||||||||||| | | ||||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 666
Target Start/End: Complemental strand, 33884105 - 33884054
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggt 666  Q
    ||||||| ||| |||||  ||||| |||||||||||||||||||||||||||    
T  33884105 ccgacacttgtaattacactgaatcatgtcattttctcacaattttatcggt 33884054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 668
Target Start/End: Original strand, 14373432 - 14373485
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 668  Q
    ||||||||||||||||| |||||||||||||||   ||| |||||||| |||||    
T  14373432 ccgacacatgtgattacattgaattatgtcattgcgtcaaaattttattggtgt 14373485  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 668
Target Start/End: Original strand, 5937428 - 5937479
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 668  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  5937428 gacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgt 5937479  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 670
Target Start/End: Original strand, 38134411 - 38134466
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 670  Q
    ||||||||| ||||||| ||||||||||||||||||||| | | ||||||||||||    
T  38134411 ccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtca 38134466  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 669
Target Start/End: Complemental strand, 1885627 - 1885573
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    ||||||| ||||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  1885627 ccgacacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtc 1885573  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 676
Target Start/End: Original strand, 35238192 - 35238250
Alignment:
Q  618 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 676  Q
    |||| ||||||||  ||||||||||||||||||||| ||| |||||||||||| |||||    
T  35238192 acacgtgtgattatattgaattatgtcattttctcaaaatattatcggtgtcaatgtgt 35238250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 662
Target Start/End: Original strand, 2144546 - 2144591
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttctcacaattttat 662  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  2144546 gacacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 663
Target Start/End: Original strand, 48964070 - 48964115
Alignment:
Q  618 acacatgtgattacgttgaattatgtcattttctcacaattttatc 663  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||    
T  48964070 acacttgtgattaaattgaattatgtcattttctcacaattttatc 48964115  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 659
Target Start/End: Original strand, 2143862 - 2143902
Alignment:
Q  619 cacatgtgattacgttgaattatgtcattttctcacaattt 659  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  2143862 cacatgtgattacattgaattatgtcattttctcaaaattt 2143902  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 674
Target Start/End: Complemental strand, 25956499 - 25956442
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgt 674  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||  ||||||||||    
T  25956499 ccgacacttgtgattacattgaattatgtcattt--tcacaattttatttgtgtcagtgt 25956442  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 653
Target Start/End: Original strand, 44172898 - 44172933
Alignment:
Q  618 acacatgtgattacgttgaattatgtcattttctca 653  Q
    |||||||||||||| |||||||||||||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctca 44172933  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 668
Target Start/End: Original strand, 22801746 - 22801799
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 668  Q
    ||||||| |||||||||  |||||||||||||| ||||| ||||| ||||||||    
T  22801746 ccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 22801799  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 663
Target Start/End: Original strand, 28635178 - 28635223
Alignment:
Q  618 acacatgtgattacgttgaattatgtcattttctcacaattttatc 663  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||    
T  28635178 acacatgtgattacgttgaattgtgaaattttctcaaaattttatc 28635223  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 669
Target Start/End: Original strand, 24295142 - 24295196
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    ||||||| ||||||||| || |||| |||||||||||||||||||||||| ||||    
T  24295142 ccgacacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtc 24295196  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 668
Target Start/End: Complemental strand, 27733898 - 27733848
Alignment:
Q  618 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 668  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 669
Target Start/End: Original strand, 26915246 - 26915299
Alignment:
Q  616 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    |||||| ||||||||| || |||||||||||||||||| ||||||||| |||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtc 26915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 669
Target Start/End: Complemental strand, 42874574 - 42874522
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| ||| |||||||    
T  42874574 gacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtc 42874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 31119140 - 31119097
Alignment:
Q  616 cgacacatgtgattacgttgaattatgtcattttctcacaattt 659  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||    
T  31119140 cgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 669
Target Start/End: Original strand, 31548293 - 31548352
Alignment:
Q  610 tgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||| |   |||||||||||    
T  31548293 tgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtc 31548352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 16972113 - 16972048
Alignment:
Q  100 ttttagaattgattctta--ctcaaatttattgttcaactcatttttgcatgaaggtattcaaaca 163  Q
    |||||||||||||| |||  | |||||||||||||||| ||| |||| |||||| |||||||||||    
T  16972113 ttttagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaaca 16972048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 669
Target Start/End: Original strand, 34073984 - 34074037
Alignment:
Q  616 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    |||||| | ||||||| || |||||||||||||| ||| |||||||||||||||    
T  34073984 cgacacttatgattacattaaattatgtcattttttcaaaattttatcggtgtc 34074037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 623 - 669
Target Start/End: Original strand, 30080514 - 30080560
Alignment:
Q  623 tgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    ||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  30080514 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 30080560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 667
Target Start/End: Complemental strand, 38784858 - 38784808
Alignment:
Q  617 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtg 667  Q
    ||||| ||||||||| ||||||||| ||||||| |||||||||||||||||    
T  38784858 gacacttgtgattacattgaattatatcattttttcacaattttatcggtg 38784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 653
Target Start/End: Complemental strand, 10009879 - 10009842
Alignment:
Q  616 cgacacatgtgattacgttgaattatgtcattttctca 653  Q
    |||||||||||||||| |||||||||||||||||||||    
T  10009879 cgacacatgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 662
Target Start/End: Complemental strand, 10010608 - 10010561
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttat 662  Q
    |||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  10010608 ccgacacatgtgattacaatgaattatgtcattttttcaaaattttat 10010561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 19167574 - 19167637
Alignment:
Q  608 tctgacgccgacacatgtgattacgttgaattatgtcattttct-cacaattttatcggtgtca 670  Q
    |||||| ||||||| ||||||||| ||||||| ||||||||| | || ||||||||||||||||    
T  19167574 tctgacaccgacacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtca 19167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 666
Target Start/End: Original strand, 26205766 - 26205816
Alignment:
Q  616 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggt 666  Q
    |||||| | |||||||  |||||||||||||||||||| ||||||||||||    
T  26205766 cgacacctatgattacactgaattatgtcattttctcaaaattttatcggt 26205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 472
Target Start/End: Complemental strand, 42594532 - 42594443
Alignment:
Q  383 gatattgcaggaattgtgaaggaaaaggacttgaaatctcttctcgagtttggtggggttgacggtgtttgtgaagttcttcgtggtcaa 472  Q
    |||||||| | |||||||||  | |||||||||||||||||||| ||| |||||||| ||| |   ||||||||  |||||| |||||||    
T  42594532 gatattgctgaaattgtgaaaaagaaggacttgaaatctcttcttgagcttggtgggattggcatagtttgtgattttcttcatggtcaa 42594443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 669
Target Start/End: Original strand, 49179720 - 49179774
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    ||||||| ||||||||| | ||||||||||| ||||||| |||||||||||||||    
T  49179720 ccgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtc 49179774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 664
Target Start/End: Original strand, 14338481 - 14338537
Alignment:
Q  608 tctgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 664  Q
    |||||| ||||||  ||||||||| ||||||||||||||||| ||| ||||||||||    
T  14338481 tctgacaccgacatttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 38332584 - 38332536
Alignment:
Q  117 actcaaatttattgttcaactcatttttgcatgaaggtattcaaacata 165  Q
    |||||||||||||||||||||||||| | |||||| |||| ||||||||    
T  38332584 actcaaatttattgttcaactcatttatccatgaatgtatacaaacata 38332536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 653
Target Start/End: Complemental strand, 20691385 - 20691335
Alignment:
Q  603 gtgtctctgacgccgacacatgtgattacgttgaattatgtcattttctca 653  Q
    |||| |||||| ||||||||| |||||||  ||||||||||||||||||||    
T  20691385 gtgtgtctgacaccgacacatatgattacactgaattatgtcattttctca 20691335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 653
Target Start/End: Complemental strand, 44427895 - 44427857
Alignment:
Q  615 ccgacacatgtgattacgttgaattatgtcattttctca 653  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  44427895 ccgacacatgtgattacattggattatgtcattttctca 44427857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 669
Target Start/End: Original strand, 18124 - 18167
Alignment:
Q  626 gattacgttgaattatgtcattttctcacaattttatcggtgtc 669  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||    
T  18124 gattacattgaattatgttattttctcaaaattttatcggtgtc 18167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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