View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_40 (Length: 341)
Name: NF20094_high_40
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 128 - 312
Target Start/End: Complemental strand, 35450838 - 35450654
Alignment:
| Q |
128 |
gaaactagttgcatcattattcattacctaaggattgctattagtgttgagttctctcttttccctccttcccctcttccaaattcttgcagtattccat |
227 |
Q |
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| T |
35450838 |
gaaactagttgcatcattattcattacctaaggattgctattagtgttgagttctctcttttccctccttcccctcttccaagttcttgcagtattccat |
35450739 |
T |
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| Q |
228 |
cttctattcagctgaccttacatgtacttgctaacaataatttctgtgactcattacaggttcgaaatctcatagaacgatgcat |
312 |
Q |
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| T |
35450738 |
cttctattcagctgaccttacatgtacttgctaacaataatttttttgcttcattacagatgtgaaatctcgtagaacgatgcat |
35450654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 35451013 - 35450885
Alignment:
| Q |
1 |
gttatttaaaacctatttcattaaggtgtactgatttatttagtattttgataaaaatgaaaaatttgtatggatttagcaattggtatgatgattaggc |
100 |
Q |
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| T |
35451013 |
gttatttaaaacctatttcattaaggtgtactgatttatttagtattttgataaaaatgaaaaatttgtatggatttagcaattggtatgatgattaggc |
35450914 |
T |
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| Q |
101 |
tataagtcgttagctttaactgtttggga |
129 |
Q |
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| T |
35450913 |
tataagtcgttagctttaactgtttggga |
35450885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 35450643 - 35450563
Alignment:
| Q |
245 |
ttacatgtacttgctaacaataatttctgtgactcattacaggttcgaaatctcatagaacgatgcatgcaatcgtatatg |
325 |
Q |
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| T |
35450643 |
ttacatgtacttgctaacaataatttctttgactcattacaggtgcgaaatctcatagaacgatgcatgcaatcgtatatg |
35450563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 1863679 - 1863727
Alignment:
| Q |
277 |
ctcattacaggttcgaaatctcatagaacgatgcatgcaatcgtatatg |
325 |
Q |
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| T |
1863679 |
ctcattacaggtgaaaaatctcatagagcgatgcatgcaattgtatatg |
1863727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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