View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_42 (Length: 336)
Name: NF20094_high_42
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 6038300 - 6037970
Alignment:
| Q |
1 |
aatgtttcaaatttgtcaaaagtcaataatagttatcatcatatgaactttcacctgagaattcataatagacataatcatcttcggacaaaaaatctat |
100 |
Q |
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| T |
6038300 |
aatgtttcaaatttgtcaaaagtcaataatagttatcatcatatgaactttcatctgagaatttataacagacataatcatcttcagacaaaaaatctat |
6038201 |
T |
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| Q |
101 |
agtggcatcatatagaagacttaaatacttgatatgttctttacatcactaccaaaatccttgacgcatataaagatattcaagctgaggacaaccatca |
200 |
Q |
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| T |
6038200 |
agtggcatcatatagaaaacttaaatacttgatatgttatttacatcactaccaaaatccttgacgcatataaagatattcaaggtgaggacaaccatca |
6038101 |
T |
|
| Q |
201 |
agaatagccagcaaaccttgattagttatctcgtctctgaaaagctggagacgacggaacccatgcatgtttagctcaatatcaaatgcctcctcatcat |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6038100 |
agaatagccagcaaacctttattagttatctcgtctctgaaaagctggagacgacggaacccatgcatgtttagctcaatatcaaatgcctcctcatcat |
6038001 |
T |
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| Q |
301 |
cgtcacttggattaccccgccctatgcttct |
331 |
Q |
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| T |
6038000 |
cgtcacttggattaccccgctctatgattct |
6037970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 301
Target Start/End: Original strand, 6132569 - 6132692
Alignment:
| Q |
178 |
attcaagctgaggacaaccatcaagaatagccagcaaaccttgattagttatctcgtctctgaaaagctggagacgacggaacccatgcatgtttagctc |
277 |
Q |
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| T |
6132569 |
attcaaggtgaagacagccatcaagaatagcaagcaaaccatcattagtcatcttgtttccaaaaagctggagatggcgtaatccaggcatggtttgcgc |
6132668 |
T |
|
| Q |
278 |
aatatcaaatgcctcctcatcatc |
301 |
Q |
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|||| ||||||| || |||||||| |
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| T |
6132669 |
aatagcaaatgcatcatcatcatc |
6132692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 6046878 - 6046834
Alignment:
| Q |
173 |
aagatattcaagctgaggacaaccatcaagaatagccagcaaacc |
217 |
Q |
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|||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
6046878 |
aagagattcaaggtgaggacaaccatcaagaatagcacgcaaacc |
6046834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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