View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_high_44 (Length: 331)
Name: NF20094_high_44
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_44 |
 | |
|
| [»] scaffold0008 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 6139098 - 6139397
Alignment:
| Q |
13 |
atgcaaggttattgccaggaggccgtgtaaatcgatttagtgttccaactaataatcttgggatgcctagcagttttgtaccaccacgacaaccacctcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6139098 |
atgcaaggttattgccaggaggccgtgtaaatcgatttagtgttccaactattaatcttgggatgcctagcagttttgtaccaccacggcaaccacctcc |
6139197 |
T |
|
| Q |
113 |
accttcagatccatcattgagtaattacaggctaaatcctcctccacctcctcctagatcgaggtttagcactgttgaacaaactggtgagtacatgcag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139198 |
accttcagatccatcattgagtaattacatgctaaatcctcctccacctcctcctagatcgaggtttagcactgttgaacaaactggtgagtacatgcag |
6139297 |
T |
|
| Q |
213 |
accaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaatgaacttagggaagagaggaacg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139298 |
accaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccgcattttcatttcaacttctaatgaacttagggaagagaggaacg |
6139397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 6152228 - 6152274
Alignment:
| Q |
265 |
accacattttcatttcaacttctaatgaacttagggaagagaggaac |
311 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
6152228 |
accacaatttcatttcaacttctcatgaacttaggccagagaggaac |
6152274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 8179 - 7877
Alignment:
| Q |
17 |
aaggttattgccaggaggccgtgtaaatcgatttagtgttccaa-------ctaataatcttgggatgcctagcagttttgtaccaccacgacaaccacc |
109 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||||||| | ||| |||||||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
8179 |
aaggttattgcaaggaggctgtgtcaatcgatttagtgttccgagttccgactattaatcttgggatgcctagtagttcggtaccaccacaacaaccacc |
8080 |
T |
|
| Q |
110 |
tccaccttcagatccatcattgagtaattacaggctaaatcctcctccacctcctcctagatcgaggtttagcactg-ttgaacaaactggtgagtacat |
208 |
Q |
| |
|
||| |||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||| ||||| ||||| |||| || ||||||| |||| ||| |
|
|
| T |
8079 |
tcctccttcagatccaccatcgagtaattacaagctaaatccccctccacctcctcctaggtcgagctttagtactgtttttttaaactggcgagt-cat |
7981 |
T |
|
| Q |
209 |
gcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaatgaacttagggaagagagg |
308 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
7980 |
gcaaaacaattcaacattggcaagatcagagaatccagctcgtcctggtggtaataagcgcattttcatttcaacttctgatgaacttagggaagggagg |
7881 |
T |
|
| Q |
309 |
aacg |
312 |
Q |
| |
|
|||| |
|
|
| T |
7880 |
aacg |
7877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 18778 - 18523
Alignment:
| Q |
17 |
aaggttattgccaggaggccgtgtaaatcgatttagtgttccaa-------ctaataatcttgggatgcctagcagttttgtaccaccacgacaaccacc |
109 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||||||| | ||| |||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18778 |
aaggttattgcaaggaggctgtgtcaatcgatttagtgttccgagttccgactattaatcttgggatgcctagtagttctgtaccaccacgacaaccacc |
18679 |
T |
|
| Q |
110 |
tccaccttcagatccatcattgagtaattacaggctaaatcctcctccacctcctcctagatcgaggtttagcactg-ttgaacaaactggtgagtacat |
208 |
Q |
| |
|
||| |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||| |||| ||| |
|
|
| T |
18678 |
tcctccttcagatccaccaccgagtaattacaggctaaatccccctccacctcctcctagatcgaggtttagtactgtttttttaaactggcgagt-cat |
18580 |
T |
|
| Q |
209 |
gcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataa |
265 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
18579 |
gcaaaacaattcaacattggcaagatcagagaatccagctcgtcctggtggtaataa |
18523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 18501 - 18458
Alignment:
| Q |
269 |
cattttcatttcaacttctaatgaacttagggaagagaggaacg |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
18501 |
cattttcatttcaacttctgatgaacttagggaagggaggaacg |
18458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 105 - 312
Target Start/End: Original strand, 25363988 - 25364194
Alignment:
| Q |
105 |
ccacctccaccttcagatccatcattgagtaattacaggctaaatcctcctccacctcctcctagatcgaggtttagcactgttgaacaaactggtgagt |
204 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
25363988 |
ccacctcctccttcagatccaccaccgagtaattacaggctaaatccccctccacctcctcctagatcgaggtttagtactgtttttcaaactggcgagt |
25364087 |
T |
|
| Q |
205 |
acatgcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaatgaacttagggaaga |
304 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25364088 |
-catgcagaacaattcaacattggcaagatcagagaatccagctctttctggcggtaataaccgcattttcatttcaacttctgatgaacttagggaaga |
25364186 |
T |
|
| Q |
305 |
gaggaacg |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
25364187 |
gaggaacg |
25364194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 7917897 - 7917821
Alignment:
| Q |
204 |
tacatgcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccacattttcatttc |
280 |
Q |
| |
|
|||||||| || |||||||||| ||||| |||||||||||| ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
7917897 |
tacatgcaaactgattcaacattggcaagttcagagaatccagctcgtgctggcggtaataacgatattttcatttc |
7917821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University