View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_53 (Length: 300)
Name: NF20094_high_53
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 12096427 - 12096152
Alignment:
| Q |
9 |
aagaatatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
12096427 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatctac |
12096328 |
T |
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| Q |
109 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
208 |
Q |
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|||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
12096327 |
cttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12096228 |
T |
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| Q |
209 |
ttggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggcttaataac |
284 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12096227 |
ttggaacaacctaactggtcctatccctgattactttagcaaacttaccaatttagccaccttagggcttaataac |
12096152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 12079787 - 12079512
Alignment:
| Q |
9 |
aagaatatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
12079787 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatctac |
12079688 |
T |
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| Q |
109 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
208 |
Q |
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|||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
12079687 |
cttacctcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12079588 |
T |
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| Q |
209 |
ttggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggcttaataac |
284 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12079587 |
ttggaacaacctaactggtcctatccctgattactttagcaaactaaccaatttagccaccttagggcttaataac |
12079512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 1248839 - 1249114
Alignment:
| Q |
9 |
aagaatatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
108 |
Q |
| |
|
||||| |||||||||||||| ||| | |||||||||||||| ||||| || || |||||||| || |||||||| ||||| || ||||| ||||| |||| |
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| T |
1248839 |
aagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgacctac |
1248938 |
T |
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| Q |
109 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
208 |
Q |
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| ||||| ||||||||||| |||||| ||| ||||||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||||| ||||| |
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| T |
1248939 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
1249038 |
T |
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| Q |
209 |
ttggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggcttaataac |
284 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
1249039 |
ctggaacagcctaaccggtcctatccctgattactttagcaagctcaccaatttagccactttagggcttaataac |
1249114 |
T |
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