View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_6 (Length: 685)
Name: NF20094_high_6
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 590; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 16 - 670
Target Start/End: Complemental strand, 43339212 - 43338558
Alignment:
| Q |
16 |
aatatcattacacagtgatcctctctaaaactgataaaaaagaaagacaaacaattttgccatggctttcttctttactactaccatgctactctttttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43339212 |
aatatcattacacagtgatcctctctaaaactgataaaaaagaaagacaaacaattttgccatggctttcttctttactactaccatgctactctttttc |
43339113 |
T |
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| Q |
116 |
aagcctgtt-agagaccaacatgcctccgccacctttccataattaatgacgtcaaaaaatatgttaattttggacgtattcaagcaatattactttatg |
214 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43339112 |
aagcctgtagagaggccaacatgcctccgccacctttccataattaatgacgtcaaaaaatatgttaattttggacgtattcaagcaatattactttatg |
43339013 |
T |
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| Q |
215 |
tttgagtggcttgagatgatcatgactaccattgaatcttcattcagcaatatgaatgatcttttgtaacataaatgtctcttttttatttgttttgaat |
314 |
Q |
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| T |
43339012 |
tttgagtggcttgagatgatcatgactaccattgaatcttcattcagcaatatgaatgatcttttataacataaatgtctcttttttatttgttttgaat |
43338913 |
T |
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| Q |
315 |
ttgtacgttcaagttttcaataaagatatatagagacagtgacggcaatgacgatgatgtttctttatctatcagatcattggtttattttgtttttagt |
414 |
Q |
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| T |
43338912 |
ttgtacgttcaagttttcaataaagatatatagagacagtgacggcaatgacgatgatgtttctttatctatcagatcattggtttattttgtttttagt |
43338813 |
T |
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| Q |
415 |
aattgttttatgtctcaaacatc-ttgatgacatatacgtgtagcttcggttcattttatttgataaatatattcttcatgcttttgtttaaaaatatca |
513 |
Q |
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| T |
43338812 |
aattgttttatgtctcaaacatctttgatgacatatac--gtagcttcggttcattttatttgataaatatattcttcatgcttttgtttaaaaatatca |
43338715 |
T |
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| Q |
514 |
ttatttatgaacataatatttgtcacaagaaagatcacctctataggtaccaagcaggaactcacgttgcgccaccaaggagagcacaccaaataaacac |
613 |
Q |
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| T |
43338714 |
ttatttatgaacataatatttgtcacaagaaagatcacctctataggtaccaaacaggaactcccgttgcgccaccaaggagggcacatcaaataaacac |
43338615 |
T |
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| Q |
614 |
tctttcaaataggtggtatttagagtccggtgccagcttaatattaggggtggaaat |
670 |
Q |
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| T |
43338614 |
tcttccaaataggtggtatctagagtccggtgccaacttaatattaggggtggaaat |
43338558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 150 - 301
Target Start/End: Complemental strand, 43344076 - 43343929
Alignment:
| Q |
150 |
ttccataattaatgacgtcaaaaaatatgttaattttggacgtattcaagcaatattactttatgtttgagtggcttgagatgatcatgactaccattga |
249 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
43344076 |
ttccatatataatgatgtcaaaaaatatgttaattttggacgtatgcaagcaatattactttatgtttgagtggcttgaaatgatcatgacttccattga |
43343977 |
T |
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| Q |
250 |
atcttcattcagcaatatgaatgatcttttgtaacataaatgtctctttttt |
301 |
Q |
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| T |
43343976 |
atcttcaagcagcaatatgaat----ctttctaacataaatctctctttttt |
43343929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 574 - 670
Target Start/End: Complemental strand, 43337332 - 43337236
Alignment:
| Q |
574 |
ctcacgttgcgccaccaaggagagcacaccaaataaacactctttcaaataggtggtatttagagtccggtgccagcttaatattaggggtggaaat |
670 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||| |
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| T |
43337332 |
ctcacgttgcgccaccaaggagggcataccaaataaacactctttcaaataggtggtatttagagtcaggtgccaacttaatatcaagggtggaaat |
43337236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 313 - 453
Target Start/End: Complemental strand, 43343894 - 43343760
Alignment:
| Q |
313 |
atttgtacgttcaagttttcaataaagatatatagagacagtgacggcaatgacgatgatgtttctttatctatcag-atcattggtttattttgttttt |
411 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| | || |||||||||||||| |
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| T |
43343894 |
atttgtacgttcaagttttcaataaagata----gagacagtgagagcaatgaggatgatgtttctttatctatcagcttggttaatttattttgttttt |
43343799 |
T |
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| Q |
412 |
agtaattgttttatgtctcaaacatcttgatgacatatacgt |
453 |
Q |
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| T |
43343798 |
ag---ttgttttatatctcaaatatcttgatgacatatacgt |
43343760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 575 - 657
Target Start/End: Complemental strand, 43343271 - 43343189
Alignment:
| Q |
575 |
tcacgttgcgccaccaaggagagcacaccaaataaacactctttcaaataggtggtatttagagtccggtgccagcttaatat |
657 |
Q |
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| T |
43343271 |
tcacgttgcgccaccaaggagggcacaccaaataaacactcttccaaataggtgatatctggagtcacgtgccaacttaatat |
43343189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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