View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_60 (Length: 277)
Name: NF20094_high_60
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 4242750 - 4242514
Alignment:
| Q |
23 |
tagatccatcacaacgccaatagcaaaaactactctagttttctccataaggtgccatcttgtatcacatccttcttcattggtgtgaacctttcttctt |
122 |
Q |
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| T |
4242750 |
tagatccatcacaacaccaatagcaaaaactactctagttttctccataaggtcccatcttgtttcacatccttcttcattggtgtgaacctttcttctt |
4242651 |
T |
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| Q |
123 |
gtctttgttccagatgtgtatactttagaaggcctatgaaaatgtggcggacctgagcaaatttgctaactcctgcattattttacagaacaatttcaca |
222 |
Q |
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| T |
4242650 |
gtccttgttccagatgtgtatactttagaaggcctatgaaaaagtggcggacctgagcaactttgctaactcctgcattattttacagaacaatttcaca |
4242551 |
T |
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| Q |
223 |
tatgttttgcattatatgtaaaggaacgcttctggct |
259 |
Q |
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| T |
4242550 |
tatattttgcattatatgtaaaggaactcttctggct |
4242514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 4235687 - 4235542
Alignment:
| Q |
74 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaat-gtggcgg |
172 |
Q |
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| T |
4235687 |
gtgccatcttgtttcaattccttcttcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcga |
4235588 |
T |
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| Q |
173 |
acctgagcaaatttgctaactcctgcattattttacagaacaattt |
218 |
Q |
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| T |
4235587 |
atttgaccatctttgctaactcctgcaatattttacgtaacaattt |
4235542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 28948905 - 28948995
Alignment:
| Q |
74 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaa |
164 |
Q |
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| T |
28948905 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaaa |
28948995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 34830050 - 34830139
Alignment:
| Q |
74 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaa |
163 |
Q |
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| T |
34830050 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaa |
34830139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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