View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_high_66 (Length: 266)
Name: NF20094_high_66
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_66 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 10712748 - 10712956
Alignment:
| Q |
31 |
cgaaccatatttattatacgaaacttgtttataaataaatggcccaccaactggttctctaaatttgctataaatacataaattttgtctcttgga-tta |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
10712748 |
cgaaccatatttattatacgaaccttgtttataaataaatggcccaccaactacttctctaaatttgctataaatacataaaatttgtctcttggattta |
10712847 |
T |
|
| Q |
130 |
gggtttcaaattccaaaattcaattgtcgcagctgctccgttgnnnnnnnnaacgaagatctaatattttatctcttggagatttaggttttgaaattca |
229 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
10712848 |
gggttttaaattccaaaattcaattgccgcagctgct-tgtt----tttttaacaaagatctaatattttgtctcttggagatttaggctttgaaattca |
10712942 |
T |
|
| Q |
230 |
acatagatatgcat |
243 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10712943 |
acatagatatgcat |
10712956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 10713350 - 10713258
Alignment:
| Q |
74 |
ccaccaactggttctctaaatttgctataaatacataaattttgtctcttggatt-agggtttcaaattccaaaattcaattgtcgcagctgct |
166 |
Q |
| |
|
||||||| || |||||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10713350 |
ccaccaattgcttctctaa-tttgctataaatatataaaatttatctcttggatttagggtttcaaattccaaaaatcaattgccgcagctgct |
10713258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 9423149 - 9423076
Alignment:
| Q |
68 |
aatggcccaccaactggttctctaaatttgctataaatacataaattttgtctcttggattagggtttcaaatt |
141 |
Q |
| |
|
||||||||||||| || |||||| ||||| ||||||||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
9423149 |
aatggcccaccaattgtttctctcaatttcctataaatacaaaaattctgtctcttgatttagggtttcaaatt |
9423076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 9448720 - 9448644
Alignment:
| Q |
65 |
ataaatggcccaccaactggttctctaaatttgctataaatacataaattttgtctctt--ggattagggtttcaaat |
140 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||||||||||||| |||||| | | ||||||||||||||| |
|
|
| T |
9448720 |
ataaatggcccaccaattctttct-taaatttgctataaatacataaattgtgtctcataggaattagggtttcaaat |
9448644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 29277893 - 29277818
Alignment:
| Q |
65 |
ataaatggcccaccaactggttctctaaatttgctataaatacataaattttgtctcttgga-ttagggtttcaaat |
140 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||||||||||||| ||| || | || |||||||||||||| |
|
|
| T |
29277893 |
ataaatggcccaccaattctttct-taaatttgctataaatacataaattgtgtttcatagatttagggtttcaaat |
29277818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University