View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_high_68 (Length: 263)

Name: NF20094_high_68
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_high_68
NF20094_high_68
[»] chr1 (11 HSPs)
chr1 (20-263)||(1816298-1816541)
chr1 (20-240)||(1856526-1856746)
chr1 (31-129)||(9162134-9162232)
chr1 (31-127)||(9229928-9230024)
chr1 (31-74)||(9219043-9219086)
chr1 (31-150)||(9118199-9118318)
chr1 (31-74)||(9200527-9200570)
chr1 (31-129)||(9170960-9171058)
chr1 (31-129)||(9178942-9179040)
chr1 (31-72)||(9156222-9156263)
chr1 (181-240)||(1842509-1842568)
[»] chr7 (2 HSPs)
chr7 (133-240)||(37567505-37567612)
chr7 (20-92)||(37567616-37567688)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 1816298 - 1816541
Alignment:
Q  20 catcaagttcccctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1816298 catcaagttcccctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaa 1816397  T
Q  120 aatgtgagctatttgagacgagtcttttctttgaagaagtttttgttccaaaatagaacctccattctgcctaaagaacttctctttcaatttgataaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1816398 aatgtgagctatttgagacgagtcttttctttgaagaagtttttgttccaaaatagaacctccattctgcctaaagaacttctctttcaatttgataaat 1816497  T
Q  220 ttccttctttggtatattaagaagaaaatcataaataatgctcc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1816498 ttccttctttggtatattaagaagaaaatcataaataatgctcc 1816541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 1856746 - 1856526
Alignment:
Q  20 catcaagttcccctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaa 119  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||    
T  1856746 catcaagttcccctttgtaaactgtaccaaaacctcctttacctatgattaagctctcatcaaatttgttagtggctttccttagttcattttcttcgaa 1856647  T
Q  120 aatgtgagctatttgagacgagtcttttctttgaagaagtttttgttccaaaatagaacctccattctgcctaaagaacttctctttcaatttgataaat 219  Q
    |||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |    
T  1856646 aatgtgagttatttgagacgagtctttcctttgacgaagtttatgttccaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagt 1856547  T
Q  220 ttccttctttggtatattaag 240  Q
    |||||| ||||||| ||||||    
T  1856546 ttccttttttggtaaattaag 1856526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 9162134 - 9162232
Alignment:
Q  31 cctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaaaatgtgagct 129  Q
    ||||||||||||||||||||||||||||| || ||||||||||| |||||  |||| || || |||||| ||||||| | |||| |||| || ||||||    
T  9162134 cctttgaaaactgtaccaaaacctcctctgccgatgattaagctatcatcgtagtttttggtggctttctttagttcctcttctgtgaatatttgagct 9162232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 9229928 - 9230024
Alignment:
Q  31 cctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaaaatgtgag 127  Q
    |||||| |||| ||||| ||||||||||| || || ||||| ||||| ||| ||||||| ||||||||| | ||||||| |||||||||||| ||||    
T  9229928 cctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgag 9230024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 9219043 - 9219086
Alignment:
Q  31 cctttgaaaactgtaccaaaacctcctctacctatgattaagct 74  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  9219043 cctttgaaaactgtaccaaaacctcctctaccgatgattaagct 9219086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 9118318 - 9118199
Alignment:
Q  31 cctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaaaatgtgagcta 130  Q
    |||||||||| |||||| ||||||||||| || ||||||||||| || ||  || |||| ||||||||  | ||||| |||||| |||| || ||||||     
T  9118318 cctttgaaaattgtaccgaaacctcctcttccaatgattaagctttcgtcgtagctgttggtagcttttttaagttccttttctgtgaatatctgagctg 9118219  T
Q  131 tttgagacgagtcttttctt 150  Q
     |||||||| ||||| ||||    
T  9118218 attgagacgtgtcttctctt 9118199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 9200527 - 9200570
Alignment:
Q  31 cctttgaaaactgtaccaaaacctcctctacctatgattaagct 74  Q
    |||||| ||||||||||||||||||||||||| |||||||||||    
T  9200527 cctttgtaaactgtaccaaaacctcctctaccgatgattaagct 9200570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 9170960 - 9171058
Alignment:
Q  31 cctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaaaatgtgagct 129  Q
    |||||| |||||||||||||||||||||| || ||||||||||| |||||  |||| || || |||||| | ||||| | |||| |||| || ||||||    
T  9170960 cctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatatttgagct 9171058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 9178942 - 9179040
Alignment:
Q  31 cctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaaaatgtgagct 129  Q
    |||||| |||||||||||||||||||||| || ||||||||||| |||||  |||| || || |||||| | ||||| | |||| |||| || ||||||    
T  9178942 cctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatatttgagct 9179040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 9156222 - 9156263
Alignment:
Q  31 cctttgaaaactgtaccaaaacctcctctacctatgattaag 72  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  9156222 cctttgaaaactgtaccaaaacctcctctgccaatgattaag 9156263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 1842568 - 1842509
Alignment:
Q  181 ccattctgcctaaagaacttctctttcaatttgataaatttccttctttggtatattaag 240  Q
    |||||||||  |||||| |||||||||| |||||| ||||||||| | ||||||||||||    
T  1842568 ccattctgctcaaagaatttctctttcattttgatgaatttccttttatggtatattaag 1842509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 37567612 - 37567505
Alignment:
Q  133 tgagacgagtcttttctttgaagaagtttttgttccaaaatagaacctccattctgcctaaagaacttctctttcaatttgataaatttccttctttggt 232  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||    
T  37567612 tgagacgagtcttttctttgacgaagtttctgtttcaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggt 37567513  T
Q  233 atattaag 240  Q
    ||||||||    
T  37567512 atattaag 37567505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 37567688 - 37567616
Alignment:
Q  20 catcaagttcccctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagt 92  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  37567688 catctagtttccctttgaaaactgtaccaaaacctcctctacctatggttaagttctcatcaaagttgttagt 37567616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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