View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_69 (Length: 262)
Name: NF20094_high_69
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 27210665 - 27210439
Alignment:
| Q |
19 |
gttgtaaacctccttaagcttttgattaaatagcatgcatggtttgtatgaagtcgtaaagaaatgcaaaccaactgtctttccctcaatctcagagata |
118 |
Q |
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| T |
27210665 |
gttgtaaacctccttaagcttttgattaaatagcacgcatggtttgtatgaagtcgtaaagaaatgcaaaccaactgtctttccctcaatctcagagata |
27210566 |
T |
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| Q |
119 |
ggtatctgttgtgcacatgaaaggaaaagtcagattggtaaatgaaccacatgatctgtggcaaacaaacagataataactaaacgaacctagctactat |
218 |
Q |
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| T |
27210565 |
ggtatctgttgtgcacatgaaaggaaaagtcagattggtaaatgaaccacatgatctgtggcaaacaaacagataataactaaacgaac----ctactat |
27210470 |
T |
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| Q |
219 |
atcatactgagttaagttattcgcttacttc |
249 |
Q |
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| T |
27210469 |
atcatactgagttaagttattcgcttacttc |
27210439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 27195422 - 27195275
Alignment:
| Q |
20 |
ttgtaaacctccttaagcttttgattaaatagcatgcatggtttgtatgaagtcgtaaagaaatgcaaaccaactgtctttccctcaatctcagagatag |
119 |
Q |
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|||||||||||||||||||||||| |||||||| |||||| | |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27195422 |
ttgtaaacctccttaagcttttgagtaaatagcgtgcatgctctgtatgaagtcgcacagaaatgcaaaccaactgtctttccctcaagctcagagatag |
27195323 |
T |
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| Q |
120 |
gtatctgttgtgcacatgaaaggaaaagtcagattggtaaatgaacca |
167 |
Q |
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| T |
27195322 |
gtatctgttgtgcacatgaaaggaaaagtcagattggtaaatgaacca |
27195275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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