View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_70 (Length: 261)
Name: NF20094_high_70
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 2925831 - 2926058
Alignment:
| Q |
16 |
aatattaatttattttcatgtatgtctaaattcattgaaattttatgtacatattcattaacataatttagtgactggnnnnnnnnn-ttactatatact |
114 |
Q |
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| T |
2925831 |
aatattaatttattttcatgtatgtctaaattcattgaa-ttttatgtacatattcattaacataatttagtgactgggaaaaaaaaattactatatact |
2925929 |
T |
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| Q |
115 |
atagcaatgtaatataaaatggagtagtttttattgtttatagaatttatttatacaccttgacc--nnnnnnnnnnnnnngaatttatttatacactgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2925930 |
atagcaatgtaatataaaatggagtagtttttattgtttatagaatttatttatacaccttgaccaaaaaaaaaaaaaaaagaatttatttatacactgt |
2926029 |
T |
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| Q |
213 |
acatgtaaaatatttgtatacatgcatct |
241 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2926030 |
acatgtaaaatatttgtatacatgcatct |
2926058 |
T |
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