View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_high_79 (Length: 244)
Name: NF20094_high_79
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_79 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 771736 - 771979
Alignment:
| Q |
1 |
tcatcaatactcccggtttactagatgtatttaaatatgggaagtcctgtatccttctccaagaatctgtacccagcgtaagaacacggacttcatattt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
771736 |
tcataaatactcccggtttactagatgtatttaaatatgggaagtcttgtatccttctccaagaatctgtacccagcgcaagaacacggacttcatattt |
771835 |
T |
|
| Q |
101 |
gcccgcacgggaggaattgtccgtgatgaaggaaataacaacagtcttataattacgaatgaaatgatcatacccaaagctatacaaagaaatataggct |
200 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
771836 |
gcccgcgcggaaggaattgtccgtgacgaaggaaataacaacagtcttataattacgaatgaaatgatcatacccaaagctatacaaagaaatataggct |
771935 |
T |
|
| Q |
201 |
cttctgtttggtgaagtttccaaaggaggcaatatcttgaattt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
771936 |
cttctgtttggtgaagtttccaaaggaggcaatatcttgaattt |
771979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 2455640 - 2455445
Alignment:
| Q |
48 |
tgtatccttctccaagaatctgtacccagcgtaagaacacggacttcatatttgcccgcacgggaggaattgtccgtgatgaaggaaataacaacagtct |
147 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| | || ||||||||||| |||||||||||||||||||| |
|
|
| T |
2455640 |
tgtatccttctccaagaatatgtacccagtgtaagaacactgacttcatatttgcccgcgaagaagtaattgtccgtgtcgaaggaaataacaacagtct |
2455541 |
T |
|
| Q |
148 |
tataattacgaatgaaatgatcatacccaaagctatacaaagaaatataggctcttctgtttggtgaagtttccaaaggaggcaatatcttgaatt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
2455540 |
tataattacgaatgaaatgatcatacccaaagctatagaaagaactacaggctcttctgttgggcgaagtttccaaaggaggcaatatcttgaatt |
2455445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 13497908 - 13497870
Alignment:
| Q |
146 |
cttataattacgaatgaaatgatcatacccaaagctata |
184 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13497908 |
cttataattatgaatgaaatgatcatacccaaagctata |
13497870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 2456056 - 2456008
Alignment:
| Q |
6 |
aatactcccggtttactagatgtatttaaatatgggaagtcctgtatcc |
54 |
Q |
| |
|
|||||||||| || || | |||||||||||||||||||||| ||||||| |
|
|
| T |
2456056 |
aatactcccgattcacaaaatgtatttaaatatgggaagtcttgtatcc |
2456008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 24417750 - 24417803
Alignment:
| Q |
34 |
aatatgggaagtcctgtatccttctccaagaatctgtacccagcgtaagaacac |
87 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
24417750 |
aatatgggaagtcttgtatcgttctccaagaatctgtacccagggtatgaacac |
24417803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 33026437 - 33026397
Alignment:
| Q |
35 |
atatgggaagtcctgtatccttctccaagaatctgtaccca |
75 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
33026437 |
atatgggaagtctggtatccttctccaagtatctgtaccca |
33026397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University