View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_high_86 (Length: 239)
Name: NF20094_high_86
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_86 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 43018111 - 43018315
Alignment:
| Q |
16 |
atgaatatctatatacttatttttcatttgaaaaagctaaccctagctaattaatcttcttttgatgatgatcttcattacatttcttcttacaggagtc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43018111 |
atgaatatctatatacttatttttcatttgaaaaagctaaccctagctaattaatcttcttttgatgatgatcttcattacatttcttcttacaggagtc |
43018210 |
T |
|
| Q |
116 |
atctattagaaaccaacaagaagctgagtggttgaaatactcttcttactggccagtcgaccctcatgacaacaaccatcatcatcatgattagaatgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43018211 |
atctattagaaaccaacaagaagctgagtggttgaaatactcttcttactggccagtcgaccctcatgacaacaaccatcatcatcatgattagaatgaa |
43018310 |
T |
|
| Q |
216 |
ggaga |
220 |
Q |
| |
|
||||| |
|
|
| T |
43018311 |
ggaga |
43018315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University