View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_high_93 (Length: 227)
Name: NF20094_high_93
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_high_93 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 29690317 - 29690526
Alignment:
| Q |
1 |
caaagcaagaactagagccatacatgatgagccctctgatcagaatcgcgttggcaataaacttattctctagttcctataccttaagaaagctcatcaa |
100 |
Q |
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| T |
29690317 |
caaagcaagaactagagccatacatgatgagccctctgatcagaatcgcgttagcaataaacttattttctagttcctataccttaagaaagctcatcaa |
29690416 |
T |
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| Q |
101 |
atactcaactcatcttcatactcttctcaagtggatattcaacttattttccagctacctatgctatcccttatgcaaacttcaaggttcttatcatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690417 |
atactcaactcatcttcatactcttctcaagtggatattcaacttattttccagctacctatgctatcccttatgcaaacttcaaggttcttatcatcat |
29690516 |
T |
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| Q |
201 |
cagcaaaggg |
210 |
Q |
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|||||||||| |
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| T |
29690517 |
cagcaaaggg |
29690526 |
T |
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Target: scaffold0010 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 27442 - 27527
Alignment:
| Q |
26 |
gatgagccctctgatcagaatcgcgttggcaataaacttattctctagttcctataccttaagaaagctcatcaaatactcaactc |
111 |
Q |
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||||||||||||||| |||||||| || |||||||||| || ||| | ||| ||||||||||||| ||||| ||||||||||||| |
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| T |
27442 |
gatgagccctctgattagaatcgcattagcaataaactccttttcttgctcccataccttaagaaacctcatgaaatactcaactc |
27527 |
T |
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