View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_10 (Length: 641)
Name: NF20094_low_10
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_10 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Complemental strand, 32688238 - 32687624
Alignment:
| Q |
18 |
acaaactcacgtaagacattaggaggttgtggtnnnnnnngagggttatgagcaaatacattggccgtaactattttgttataacatcgtaatactgcat |
117 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32688238 |
acaaactcaagtaagacattaggaggttgtggtaaaagaagagggttatgagcaaatacattggtcgtaactattttgttataacatcgtaatactgcat |
32688139 |
T |
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| Q |
118 |
gtgannnnnnnnn---aatctaagcgttaccgtggatttttctgccagtaatacagtgagtgatatctgatgtgcannnnnnnnnnnnnatttaagattt |
214 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32688138 |
gtgattttttttttttaatctaagcgttactgtggatttttctgccagtaatacagtgagtgatatctgatgtgcattttttttttc--atttaagattt |
32688041 |
T |
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| Q |
215 |
aagtttaactttggaatcaaaataaggcttacgcaccagtatttgagcattcaaccaaaaagagagctcttcaaatttcaatttgtttttctacactaaa |
314 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |
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| T |
32688040 |
aagtttaattttggaatcaaaataaggcttacgcaccagtatttgagcattcaaccaaaaagagagctcttcaaatttcaattttttt----acacaaaa |
32687945 |
T |
|
| Q |
315 |
attgaactaaaactatccatactcttttcttaggctcaggatgatttcttttccttcctgttttattttctttatcattttcatcaaatgttattgaaac |
414 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32687944 |
attgaactaaacctatccatactcttttcttaggctcaggatgatttcttttccttcctgttttattttctttatcattttcatcaaatgttattgaaac |
32687845 |
T |
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| Q |
415 |
aaatattatatcattttcatttctaccccttattttgtcaaagagtggacctgagtcattattgttgtacgttagctttcatgagcgttgttnnnnnnng |
514 |
Q |
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| T |
32687844 |
aaatattatatcattttcatttctaccccttattttgtcaaagagtggacctgagtcattattgttgtacgttagctttcatgagcgttgttaaaaaaag |
32687745 |
T |
|
| Q |
515 |
ttagcgtttatgggatacaagagaatttttatagagttattagtaaaaaagttagtatttatttccagaattaacgtgttaatgggataaaagagaatta |
614 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32687744 |
ttagcgtttatgggatacaaaagaatttttatagagttattagtaaaaaagttagtatttatttccagatttaacgtgttaatgggataaaagagaatta |
32687645 |
T |
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| Q |
615 |
tttttatatgatattcttcga |
635 |
Q |
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| T |
32687644 |
tttttatatgattttgttcga |
32687624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 37700 - 37638
Alignment:
| Q |
372 |
ctgttttattttctttatcattttcatcaaatgttattgaaacaaatattatatcattttcat |
434 |
Q |
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||||||||||||||| || ||||||| ||||||||||||||||||| |||||||| ||||||| |
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| T |
37700 |
ctgttttattttcttcataattttcagcaaatgttattgaaacaaaaattatatcgttttcat |
37638 |
T |
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