View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_low_102 (Length: 219)
Name: NF20094_low_102
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_102 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 37593218 - 37593410
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593218 |
tgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
37593317 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593318 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
37593410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 37822918 - 37823110
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37822918 |
tgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
37823017 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823018 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
37823110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 37532114 - 37532306
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37532114 |
tgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgacttaaagat |
37532213 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532214 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
37532306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 37638760 - 37638952
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638760 |
tgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
37638859 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638860 |
tgtggaatgctacctatgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
37638952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 37710521 - 37710713
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710521 |
tgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
37710620 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710621 |
tgtggaatgctacttgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
37710713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 37402144 - 37401952
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402144 |
tgagaggaagttcaaatttgtcaaagcctcaggaatctcacccgtcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
37402045 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402044 |
tgtggaatgctacctgtgattccattatttgaaagattaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
37401952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 37695609 - 37695801
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
37695609 |
tgagaggaagttcaaatttgtcaaagccacaggaatctctcccgtcaattggttacatgagaggtccaaccactccaattttctcaaatgacccaaagat |
37695708 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695709 |
tgtggaatactacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
37695801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 37394032 - 37393839
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
37394032 |
tgagaggaaattcaaatttgtcaaagccacgggaatctcacccttcaattggttccttgagaggtccaaccactctaaatttctcaaatgacttaaagat |
37393933 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaact |
204 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||||| || ||||||| |
|
|
| T |
37393932 |
tgtggaatggttcctgtgattccattgtttgagaggttaaggcctttgagagaatttaattctccaatgacttctgaaatttctccatcaaact |
37393839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 37701700 - 37701892
Alignment:
| Q |
11 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
110 |
Q |
| |
|
||||| ||| |||||||||||||||||| | |||||||||||| |||| |||| | |||||||||||||||||||| ||||| | || |||||||||| |
|
|
| T |
37701700 |
tgagaggaaattcaaatttgtcaaagccgcgggaatctcacccgtcaaacggttcctggagaggtccaaccactccaagtttcttagattactcaaagat |
37701799 |
T |
|
| Q |
111 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37701800 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttaagagaatataattctccaatgacttgtggaattctaccttcaaac |
37701892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 37434734 - 37434916
Alignment:
| Q |
21 |
ttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| ||||| ||||||||| ||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
37434734 |
ttcaaatttgtcaaagccacaggaatttcacccgtcaactggttttttgagaggtctaaccactccaaatgtctcaatttactcaaagattgtggaatgg |
37434833 |
T |
|
| Q |
121 |
tacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
37434834 |
tacctgtgattctattgtttgaaaggttaagacctttgagagaatttaattctccaatgactagaggaatttttccttcaaac |
37434916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 37383462 - 37383280
Alignment:
| Q |
21 |
ttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||| | |||||||||| ||||||||| | ||||| |
|
|
| T |
37383462 |
ttcaaatttgtcaaagccaaaggaatctcacccttcaattggttccttgagaggtctaaccactctagatttctcaaactactcaaagaataaggaattg |
37383363 |
T |
|
| Q |
121 |
tacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
37383362 |
tacctgtgattttattgtttgaaaggttaaggcctttgagagaaatcaattctccaaagacttgtggaatttctccttcaaac |
37383280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 37428126 - 37428258
Alignment:
| Q |
68 |
tgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaattt |
167 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
37428126 |
tgagaggtccaaccactccaagtttctcagattactcaaagattgtggaatgctacctgtgattccattgtttgaaa---taagacctttgagagaattc |
37428222 |
T |
|
| Q |
168 |
aattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
37428223 |
aattctccaacgacttgaggaatttctccttcaaac |
37428258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 37440085 - 37440238
Alignment:
| Q |
12 |
gagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagatt |
111 |
Q |
| |
|
|||| ||| |||||||||||||||| ||| ||||| ||||| |||||||||| | |||||||||| ||||||| ||||||||||| | ||||||||||| |
|
|
| T |
37440085 |
gagaggaaattcaaatttgtcaaagtcacgggaatttcaccggtcaattggtttcttgagaggtccgaccactctaaatttctcaatttactcaaagatt |
37440184 |
T |
|
| Q |
112 |
gtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaat |
165 |
Q |
| |
|
|||||||| ||| | |||||||||| ||| | |||||||| ||||| ||||||| |
|
|
| T |
37440185 |
gtggaatggtacttttgattccattttttaagaggttaaggcctttaagagaat |
37440238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 16844132 - 16843950
Alignment:
| Q |
21 |
ttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
120 |
Q |
| |
|
|||||||||| ||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16844132 |
ttcaaatttgccaaagcctcaagaatctctcccgtcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
16844033 |
T |
|
| Q |
121 |
tacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16844032 |
tacccgtgattccattttttgaaaggttaagtccaatgagagaatataactctccaatgacttgtggaatttcaccttcaaac |
16843950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 16846799 - 16846617
Alignment:
| Q |
21 |
ttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
16846799 |
ttcaaatttgtcaaagccacaggaatctctcccgtcatttggttccttgagaggtccaaccactccaaatgtctcaatttactcaaagattgtggaatgg |
16846700 |
T |
|
| Q |
121 |
tacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
16846699 |
tacctgtgattctattgtttgaaaggttaagacctttgagagaatttaattctccaatgacctctggaatttttccttcaaac |
16846617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 24218876 - 24218685
Alignment:
| Q |
12 |
gagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagatt |
111 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||| ||| |||| | ||| | |||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
24218876 |
gagaggaaattcaaatttgtcaaagccataggaatcttaccactcaagttgtttcttgagaggtccaaccactccaaatttcgcaaattactcaaagatt |
24218777 |
T |
|
| Q |
112 |
gtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaac |
203 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
24218776 |
gtggaatggtacctatgatttgattgtgtgaaaggttaaggcctttgagaaaatttaatttcccaatgacttgtggaatttctccttcaaac |
24218685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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