View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_103 (Length: 215)
Name: NF20094_low_103
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_103 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 34788853 - 34788672
Alignment:
| Q |
14 |
aaaatatgcataaaattcaggaaaagcatggacagaaagtactacaaatccaacaaaacagagacttaaaacaaaaatacttagaagttcacaaaaggct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34788853 |
aaaatatgcataaaattcaggaaaagcatggacagaaagtactacaaatccaacaaaacagagacttaaac--aaaatacttagaagttcacaaaaggct |
34788756 |
T |
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| Q |
114 |
gcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacacg |
197 |
Q |
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| T |
34788755 |
gcttacttgtacacatctcttgtttgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacacg |
34788672 |
T |
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Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 2292340 - 2292514
Alignment:
| Q |
14 |
aaaatatgcataaaattcaggaaaagcatggacagaaagtactacaaatccaacaaaacagagacttaaaacaaaaatacttagaagttcacaaaaggct |
113 |
Q |
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||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | ||| ||| ||||||||||||||||| |
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| T |
2292340 |
aaaatatgcttgcaatacaggaaaagcatggatagaaagtactacaaatccaacaaaacagagatttaaac--acaatgcttggaagttcacaaaaggct |
2292437 |
T |
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| Q |
114 |
gcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaag |
190 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
2292438 |
gcttacttgtacacgtctcttgttcgctccatgtctccagcatcgagttcttcatagagtgcataattaatcctaag |
2292514 |
T |
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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 2597576 - 2597672
Alignment:
| Q |
100 |
gttcacaaaaggctgcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacac |
196 |
Q |
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||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||| ||| ||||| |
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| T |
2597576 |
gttcagaaaaggctgcttacctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaagtgcataactaatccaaagttacac |
2597672 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 49279879 - 49279942
Alignment:
| Q |
121 |
tgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaat |
184 |
Q |
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| T |
49279879 |
tgtacacatctcttgctcgctccatatctccagcatcaagctcttcatagagtgcatacttaat |
49279942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 2597472 - 2597520
Alignment:
| Q |
16 |
aatatgcataaaattcaggaaaagcatggacagaaagtactacaaatcc |
64 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
2597472 |
aatatgcatacaattcaggaaaaccatggacagaaagtactacaaatcc |
2597520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 49276322 - 49276386
Alignment:
| Q |
121 |
tgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatc |
185 |
Q |
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||||||||||||||| ||||||||||| || || ||||| ||||||||| |||||||||||||| |
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| T |
49276322 |
tgtacacatctcttgctcgctccatatttctagtatcaaactcttcataacgtgcataattaatc |
49276386 |
T |
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